C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5239
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081864 Gm5239-201 ENSMUSG00000062742 10090 + 18:35536583-35536951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081864 0.860±0.14 0.208±0.00 0.078±0.04 0.038±0.00 0.433±0.18 0.530±0.00 0.252±0.16 0.356±0.31 0.075±0.03 0.165±0.00 0.111±0.00 1.068±0.65 0.374±0.37 0.156±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 0 270
ENSDART00000123908 UBC-201 protein_coding Danio_rerio 0 259
ENSDART00000097583 ubb-001 protein_coding Danio_rerio 0 248
ENSDART00000099105 ubc-001 protein_coding Danio_rerio 0 239
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 281
ENST00000408928 AC099535.4-001 processed_pseudogene Homo_sapiens 0 298
ENST00000461723 UBA52P5-001 processed_pseudogene Homo_sapiens 3.00004e-41 171
ENST00000535131 UBC-015 protein_coding Homo_sapiens 0 281
ENST00000535859 UBC-013 protein_coding Homo_sapiens 0 281
ENST00000536661 UBC-010 processed_transcript Homo_sapiens 0 228
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 281
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 281
ENST00000540351 UBC-009 protein_coding Homo_sapiens 0 281
ENST00000540700 UBC-011 protein_coding Homo_sapiens 0 281
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 281
ENST00000541645 UBC-014 protein_coding Homo_sapiens 0 281
ENST00000542416 UBC-008 protein_coding Homo_sapiens 0 237
ENST00000544481 UBC-017 processed_transcript Homo_sapiens 0 272
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 281
ENST00000546271 UBC-012 protein_coding Homo_sapiens 0 281

Loading