C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000099105 ubc-001 ENSDARG00000067755 7955 - 11:21577566-21580026 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000099105
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000099105 158.381±161.83 67.391±61.69 193.529±80.50 14.435±0.00 78.372±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006N CIL_00006N_0001 CGP 11:21525771-21580026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081864 Gm5239-201 protein_coding Mus_musculus 0 239
ENSMUST00000081940 Uba52-005 protein_coding Mus_musculus 0 270
ENSMUST00000082002 Gm7808-201 protein_coding Mus_musculus 0 261
ENSMUST00000089430 Gm11808-001 protein_coding Mus_musculus 0 270
ENSMUST00000108707 Ubc-003 protein_coding Mus_musculus 0 684
ENSMUST00000118642 Gm7331-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000121623 Kxd1-005 protein_coding Mus_musculus 0 270
ENSMUST00000124967 Uba52-006 protein_coding Mus_musculus 0 270
ENSMUST00000125184 Uba52-001 protein_coding Mus_musculus 0 270
ENSMUST00000127793 Uba52-007 retained_intron Mus_musculus 2e-32 143
ENSMUST00000129909 Uba52-003 protein_coding Mus_musculus 0 270
ENSMUST00000135446 Uba52-002 protein_coding Mus_musculus 0 270
ENSMUST00000136312 Ubc-001 protein_coding Mus_musculus 0 1779
ENSMUST00000138260 Kxd1-007 protein_coding Mus_musculus 0 270
ENSMUST00000140679 Uba52-004 protein_coding Mus_musculus 0 270
ENSMUST00000156249 Ubc-002 protein_coding Mus_musculus 0 1779
ENSMUST00000165126 Uba52-201 protein_coding Mus_musculus 0 270
ENSMUST00000183770 Gm7866-001 processed_pseudogene Mus_musculus 0 263
ENST00000302182 UBB-001 protein_coding Homo_sapiens 0 675
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 1746
ENST00000392399 UBBP1-001 processed_pseudogene Homo_sapiens 0 348
ENST00000395837 UBB-002 protein_coding Homo_sapiens 0 675
ENST00000395839 UBB-003 protein_coding Homo_sapiens 0 675
ENST00000399822 UBA52P6-001 processed_pseudogene Homo_sapiens 0 215
ENST00000430157 UBA52-002 protein_coding Homo_sapiens 0 272
ENST00000442744 UBA52-001 protein_coding Homo_sapiens 0 272
ENST00000461723 UBA52P5-001 processed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000466070 CTA-242H14.1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000480068 RP11-689J19.1-001 processed_pseudogene Homo_sapiens 0 198
ENST00000498379 UBA52P8-001 processed_pseudogene Homo_sapiens 0 189
ENST00000535131 UBC-015 protein_coding Homo_sapiens 0 520
ENST00000535788 UBB-005 protein_coding Homo_sapiens 0 460
ENST00000535859 UBC-013 protein_coding Homo_sapiens 0 420
ENST00000536661 UBC-010 processed_transcript Homo_sapiens 0 233
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 1746
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 992
ENST00000540351 UBC-009 protein_coding Homo_sapiens 0 558
ENST00000540700 UBC-011 protein_coding Homo_sapiens 0 460
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 569
ENST00000541645 UBC-014 protein_coding Homo_sapiens 0 540
ENST00000542416 UBC-008 protein_coding Homo_sapiens 0 243
ENST00000544481 UBC-017 processed_transcript Homo_sapiens 0 483
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 769
ENST00000546271 UBC-012 protein_coding Homo_sapiens 0 475
ENST00000577640 UBB-008 protein_coding Homo_sapiens 0 612
ENST00000578706 UBB-007 protein_coding Homo_sapiens 0 294
ENST00000578713 UBBP4-004 protein_coding Homo_sapiens 0 577
ENST00000583708 UBBP4-003 protein_coding Homo_sapiens 0 601
ENST00000584398 UBBP4-006 protein_coding Homo_sapiens 0 276
ENST00000584755 UBBP4-001 protein_coding Homo_sapiens 0 773
ENST00000594527 UBA52-013 protein_coding Homo_sapiens 3e-39 165
ENST00000595158 UBA52-009 protein_coding Homo_sapiens 0 272
ENST00000595683 UBA52-004 protein_coding Homo_sapiens 0 272
ENST00000596272 UBA52-012 protein_coding Homo_sapiens 0 198
ENST00000596273 UBA52-003 protein_coding Homo_sapiens 0 272
ENST00000596304 UBA52-005 protein_coding Homo_sapiens 0 272
ENST00000597451 UBA52-011 protein_coding Homo_sapiens 0 272
ENST00000598780 UBA52-008 protein_coding Homo_sapiens 0 272
ENST00000598814 UBA52-007 retained_intron Homo_sapiens 9e-31 137
ENST00000599256 UBA52-006 protein_coding Homo_sapiens 0 241
ENST00000599551 UBA52-010 protein_coding Homo_sapiens 0 272
ENST00000599595 UBA52-014 protein_coding Homo_sapiens 0 272
ENST00000614404 UBB-201 protein_coding Homo_sapiens 0 675

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