C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000035235 UBC-001 ENSDARG00000002369 7955 + 5:43682726-43687072 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000035235
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000035235 22.304±18.81 75.636±51.26 49.601±3.00 22.040±0.00 362.863±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058V CIL_00058V_0001 CGP 5:43672944-43714907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019649 Ubb-001 protein_coding Mus_musculus 0 1009
ENSMUST00000081864 Gm5239-201 protein_coding Mus_musculus 0 270
ENSMUST00000081940 Uba52-005 protein_coding Mus_musculus 0 294
ENSMUST00000082002 Gm7808-201 protein_coding Mus_musculus 0 287
ENSMUST00000089430 Gm11808-001 protein_coding Mus_musculus 0 294
ENSMUST00000111388 Gm1821-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000118642 Gm7331-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000119491 Gm11517-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000121623 Kxd1-005 protein_coding Mus_musculus 0 294
ENSMUST00000124967 Uba52-006 protein_coding Mus_musculus 0 294
ENSMUST00000125184 Uba52-001 protein_coding Mus_musculus 0 294
ENSMUST00000127793 Uba52-007 retained_intron Mus_musculus 1e-39 167
ENSMUST00000129909 Uba52-003 protein_coding Mus_musculus 0 294
ENSMUST00000135446 Uba52-002 protein_coding Mus_musculus 0 294
ENSMUST00000138260 Kxd1-007 protein_coding Mus_musculus 0 294
ENSMUST00000140679 Uba52-004 protein_coding Mus_musculus 0 294
ENSMUST00000165126 Uba52-201 protein_coding Mus_musculus 0 292
ENSMUST00000183770 Gm7866-001 processed_pseudogene Mus_musculus 0 285
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 1646
ENST00000408928 AC099535.4-001 processed_pseudogene Homo_sapiens 0 198
ENST00000535131 UBC-015 protein_coding Homo_sapiens 0 558
ENST00000535859 UBC-013 protein_coding Homo_sapiens 0 459
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 1646
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 1068
ENST00000540351 UBC-009 protein_coding Homo_sapiens 0 592
ENST00000540700 UBC-011 protein_coding Homo_sapiens 0 494
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 597
ENST00000541645 UBC-014 protein_coding Homo_sapiens 0 573
ENST00000544481 UBC-017 processed_transcript Homo_sapiens 0 521
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 785
ENST00000546271 UBC-012 protein_coding Homo_sapiens 0 508
ENST00000546846 RP3-432I18.1-001 processed_pseudogene Homo_sapiens 5.60519e-45 183

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