C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471152 RP11-3P17.3-001 ENSG00000234851 9606 - 3:161429127-161429597 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000471152
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000471152 2.723±0.00 3.905±0.00 6.875±0.00 7.606±0.00 3.382±0.00 4.541±0.00 12.390±0.00 5.498±0.00 2.521±0.00 6.994±4.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049N CIL_00049N_0002 CGP 3:161344792-161503942

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 604
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 599
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 575
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 562
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 562
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000118798 Gm7312-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 436
ENSMUST00000121008 Rpl23a-ps4-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000187124 RP23-466F9.2-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000105172 Gm6096-201 protein_coding Mus_musculus 0 379
ENSMUST00000191583 Rpl23a-ps11-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000188369 Rpl23a-ps9-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000187903 RP23-349I9.24-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000187984 RP23-349I9.11-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000185244 RP23-349I9.15-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000186898 RP23-466F9.4-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000185511 Rpl23a-ps10-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000120350 Rpl23a-ps13-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000118608 Gm11935-001 processed_pseudogene Mus_musculus 1e-33 147

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