C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 3 (gene/pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513398 ACTN3-001 ENSG00000248746 9606 + 11:66546841-66563329 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000513398
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000513398 0.193±0.00 0.233±0.00 42.552±42.51 0.063±0.00 0.010±0.00 0.151±0.00 0.062±0.03 44.733±20.53 0.145±0.11 0.026±0.00 0.597±0.23

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005178 TAS integrin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0005884 TAS actin filament
GO:0005925 IMP focal adhesion
GO:0008307 TAS structural constituent of muscle
GO:0030049 TAS muscle filament sliding
GO:0031143 TAS pseudopodium
GO:0042803 TAS protein homodimerization activity
GO:0042981 NAS regulation of apoptotic process
GO:0048041 IMP focal adhesion assembly
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006626 Actn3-001 protein_coding Mus_musculus 0 3426
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 1613
ENSMUST00000168193 Actn2-201 protein_coding Mus_musculus 0 1578
ENSMUST00000064204 Actn2-001 protein_coding Mus_musculus 0 1578
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 1546
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 1450
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 1419
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 1249
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 1134
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 1134
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 1134
ENSMUST00000138811 Actn3-002 processed_transcript Mus_musculus 0 1112
ENSMUST00000127210 Actn4-005 protein_coding Mus_musculus 0 1053
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 789
ENSDART00000130717 ACTN4 (3 of 3)-201 protein_coding Danio_rerio 0 392
ENSMUST00000110616 Actn2-002 protein_coding Mus_musculus 0 390
ENSMUST00000150493 Actn4-006 processed_transcript Mus_musculus 0 385
ENSDART00000050258 protein_coding Danio_rerio 0 237

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