C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15504
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119674 Gm15504-001 ENSMUSG00000082954 10090 - 7:80237680-80237944 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverLungOvaryPlacentaENSMUST00000119674
Transcript ID Adrenal Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000119674 0.478±0.00 0.642±0.00 0.330±0.02 0.320±0.03 0.560±0.00 0.944±0.52 0.525±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500
CIL_0000SU CIL_0000SU_0002 CGP 7:80227156-80241006
CIL_0003GZ CIL_0003GZ_0002 CGP 7:80232867-80260821

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 259
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 198
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 206
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 1.00053e-42 176
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 215
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 224
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 259
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 2e-36 158
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 259

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