C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415286 RPS19P1-001 ENSG00000214612 9606 + 20:18504633-18505066 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000415286
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000415286 0.242±0.00 0.267±0.00 0.079±0.00 0.409±0.26 0.133±0.00 0.146±0.00 0.647±0.36 0.238±0.00 0.241±0.10 0.233±0.00 0.247±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MU CIL_0002MU_0001 CGP 20:18486540-18561415

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181233 Rps19-ps6-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000091925 Rps19-ps4-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000108429 Rps19-006 protein_coding Mus_musculus 0 564
ENSMUST00000108430 Rps19-001 protein_coding Mus_musculus 0 564
ENSMUST00000168472 Rps19-ps1-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000100614 Rps19-ps2-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000116122 Rps19-ps7-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000124035 Rps19-008 protein_coding Mus_musculus 0 525
ENSMUST00000108428 Rps19-003 protein_coding Mus_musculus 0 525
ENSMUST00000153451 Rps19-005 protein_coding Mus_musculus 0 512
ENSMUST00000116174 Rps19-ps3-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000156372 Rps19-007 protein_coding Mus_musculus 0 490
ENSMUST00000159750 Rps19-ps10-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000161787 Rps19-ps9-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000160308 Rps19-ps11-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000180714 Rps19-ps8-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000181937 Rps19-ps12-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000180504 Rps19-ps13-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000180745 Rps19-ps5-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000119451 Gm14861-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000130335 Rps19-010 processed_transcript Mus_musculus 0 344
ENSMUST00000129847 Rps19-004 nonsense_mediated_decay Mus_musculus 0 344
ENSMUST00000119684 Gm9516-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000119674 Gm15504-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000119807 Gm15745-001 processed_pseudogene Mus_musculus 4.99983e-42 174
ENSMUST00000121832 Rps19-ps14-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000138662 Rps19-002 retained_intron Mus_musculus 6e-32 141
ENSMUST00000146004 Rps19-009 processed_transcript Mus_musculus 2e-22 110

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