C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480487 RPS19P3-001 ENSG00000240463 9606 - 14:34568689-34569129 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000480487
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000480487 0.677±0.00 2.353±0.00 2.724±0.00 0.596±0.00 2.673±1.34 0.856±0.57 0.492±0.27 0.123±0.00 0.997±0.78 1.085±0.52 1.541±1.39 1.406±1.06 0.349±0.00 0.508±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RR CIL_0008RR_0001 VISTA 14:33972978-34576380
CIL_0005RF CIL_0005RF_0002 CGP 14:34515929-34630183
CIL_0005RE CIL_0005RE_0002 CGP 14:34561094-34714823

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091925 Rps19-ps4-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000181233 Rps19-ps6-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000108429 Rps19-006 protein_coding Mus_musculus 0 551
ENSMUST00000108430 Rps19-001 protein_coding Mus_musculus 0 551
ENSMUST00000168472 Rps19-ps1-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000100614 Rps19-ps2-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000116122 Rps19-ps7-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000124035 Rps19-008 protein_coding Mus_musculus 0 512
ENSMUST00000108428 Rps19-003 protein_coding Mus_musculus 0 512
ENSMUST00000116174 Rps19-ps3-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000153451 Rps19-005 protein_coding Mus_musculus 0 488
ENSMUST00000159750 Rps19-ps10-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000161787 Rps19-ps9-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000156372 Rps19-007 protein_coding Mus_musculus 0 460
ENSMUST00000181937 Rps19-ps12-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000180714 Rps19-ps8-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000180745 Rps19-ps5-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000130335 Rps19-010 processed_transcript Mus_musculus 0 327
ENSMUST00000129847 Rps19-004 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000119674 Gm15504-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000119807 Gm15745-001 processed_pseudogene Mus_musculus 6.00036e-42 174
ENSMUST00000138662 Rps19-002 retained_intron Mus_musculus 2e-26 122

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