C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405355 RP11-346C16.4-001 ENSG00000219559 9606 - 6:110562175-110562615 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryTestisENST00000405355
Transcript ID Adipose Adrenal Breast Colon Ovary Testis
ENST00000405355 0.040±0.00 0.087±0.00 0.046±0.00 0.251±0.00 0.065±0.00 0.118±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091925 Rps19-ps4-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000181233 Rps19-ps6-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000168472 Rps19-ps1-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000100614 Rps19-ps2-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000108429 Rps19-006 protein_coding Mus_musculus 0 466
ENSMUST00000108430 Rps19-001 protein_coding Mus_musculus 0 466
ENSMUST00000159750 Rps19-ps10-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000116122 Rps19-ps7-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000161787 Rps19-ps9-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000124035 Rps19-008 protein_coding Mus_musculus 0 424
ENSMUST00000108428 Rps19-003 protein_coding Mus_musculus 0 424
ENSMUST00000116174 Rps19-ps3-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000153451 Rps19-005 protein_coding Mus_musculus 0 411
ENSMUST00000156372 Rps19-007 protein_coding Mus_musculus 0 394
ENSMUST00000160308 Rps19-ps11-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000181937 Rps19-ps12-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000180714 Rps19-ps8-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000180504 Rps19-ps13-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000180745 Rps19-ps5-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000130335 Rps19-010 processed_transcript Mus_musculus 0 298
ENSMUST00000129847 Rps19-004 nonsense_mediated_decay Mus_musculus 0 298
ENSMUST00000119451 Gm14861-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000119684 Gm9516-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000119674 Gm15504-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000119807 Gm15745-001 processed_pseudogene Mus_musculus 3e-35 152
ENSMUST00000121832 Rps19-ps14-001 processed_pseudogene Mus_musculus 3e-24 115
ENSMUST00000146004 Rps19-009 processed_transcript Mus_musculus 3e-19 99

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