C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: predicted gene 12067
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119755 Gm12067-001 ENSMUSG00000081767 10090 - 11:24552438-24553962 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryENSMUST00000119755
Transcript ID Brain Ovary
ENSMUST00000119755 0.028±0.00 0.467±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WW CIL_0008WW_0002 VISTA 11:24012332-24614280
CIL_000881 CIL_000881_0002 VISTA 11:24029867-24633908
CIL_0007LM CIL_0007LM_0002 UCNEbase 11:24062983-26981636
CIL_0008BH CIL_0008BH_0002 VISTA 11:24070835-24671855
CIL_00096S CIL_00096S_0002 VISTA 11:24127204-24728274
CIL_000889 CIL_000889_0002 VISTA 11:24174193-24774926
CIL_0008BV CIL_0008BV_0002 VISTA 11:24184733-24786202
CIL_0008O3 CIL_0008O3_0002 VISTA 11:24318259-24919578
CIL_0008BU CIL_0008BU_0002 VISTA 11:24408578-25010421
CIL_00088R CIL_00088R_0002 VISTA 11:24463882-25065491
CIL_0009CS CIL_0009CS_0002 VISTA 11:24483037-25084368
CIL_0007XW CIL_0007XW_0002 VISTA 11:24539672-25141740
CIL_00087K CIL_00087K_0002 VISTA 11:24548028-25149346

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225792 DDX5-001 protein_coding Homo_sapiens 0 436
ENST00000450599 DDX5-006 protein_coding Homo_sapiens 0 436
ENST00000540698 DDX5-003 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000578491 DDX5-023 processed_transcript Homo_sapiens 0 198
ENST00000578758 DDX5-030 retained_intron Homo_sapiens 0 213
ENST00000578804 DDX5-005 protein_coding Homo_sapiens 0 436
ENST00000579461 DDX5-029 retained_intron Homo_sapiens 1e-21 108
ENST00000581230 DDX5-002 retained_intron Homo_sapiens 0 329
ENST00000581693 DDX5-004 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000585317 DDX5-024 retained_intron Homo_sapiens 1e-21 108

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