C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450599 DDX5-006 ENSG00000108654 9606 - 17:64499622-64506287 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverLungMusclePlacentaTestisENST00000450599
Transcript ID Adipose Breast Colon Kidney Liver Lung Muscle Placenta Testis
ENST00000450599 34.141±0.00 39.118±0.00 14.663±0.00 39.724±0.00 16.887±0.00 47.169±0.00 7.023±0.00 25.788±0.00 70.720±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012I CIL_00012I_0001 CGP 17:64477785-64508199
CIL_00012F CIL_00012F_0001 CGP 17:64499616-64542461

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003712 IEA transcription cofactor activity
GO:0003713 IDA transcription coactivator activity
GO:0003724 NAS:IEA RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0016020 IDA membrane
GO:0016049 NAS cell growth
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 IDA estrogen receptor binding
GO:0030529 IDA ribonucleoprotein complex
GO:0033148 IDA positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 IDA pre-mRNA binding
GO:0043517 IMP positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 IDA poly(A) RNA binding
GO:0045667 ISS regulation of osteoblast differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050681 IDA androgen receptor binding
GO:0060765 IMP regulation of androgen receptor signaling pathway
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0072332 IMP intrinsic apoptotic signaling pathway by p53 class mediator
GO:2001014 ISS regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021062 Ddx5-001 protein_coding Mus_musculus 0 2660
ENSMUST00000120566 Gm12183-001 processed_pseudogene Mus_musculus 0 2063
ENSMUST00000133426 Ddx5-002 nonsense_mediated_decay Mus_musculus 0 1554
ENSMUST00000127481 Ddx5-007 nonsense_mediated_decay Mus_musculus 0 841
ENSMUST00000130172 Ddx5-009 processed_transcript Mus_musculus 0 625
ENSMUST00000106778 Ddx5-006 retained_intron Mus_musculus 0 523
ENSMUST00000123339 Ddx5-004 protein_coding Mus_musculus 0 442
ENSMUST00000129585 Ddx5-003 protein_coding Mus_musculus 0 442
ENSMUST00000106779 Ddx5-008 processed_transcript Mus_musculus 0 442
ENSMUST00000119755 Gm12067-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000151741 Ddx5-005 processed_transcript Mus_musculus 0 431

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