C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000581230 DDX5-002 ENSG00000108654 9606 - 17:64499616-64506289 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000581230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000581230 16.412±0.00 75.224±0.00 31.911±0.00 21.899±1.17 44.467±10.86 47.586±33.20 18.413±4.28 31.607±17.61 20.476±9.62 89.461±41.75 6.826±0.00 40.825±12.17 12.154±0.00 87.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012I CIL_00012I_0001 CGP 17:64477785-64508199
CIL_00012F CIL_00012F_0001 CGP 17:64499616-64542461

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133426 Ddx5-002 nonsense_mediated_decay Mus_musculus 0 3410
ENSMUST00000021062 Ddx5-001 protein_coding Mus_musculus 0 1853
ENSMUST00000120566 Gm12183-001 processed_pseudogene Mus_musculus 0 1736
ENSMUST00000127481 Ddx5-007 nonsense_mediated_decay Mus_musculus 0 841
ENSMUST00000129585 Ddx5-003 protein_coding Mus_musculus 0 824
ENSMUST00000123339 Ddx5-004 protein_coding Mus_musculus 0 763
ENSMUST00000130172 Ddx5-009 processed_transcript Mus_musculus 0 625
ENSMUST00000106778 Ddx5-006 retained_intron Mus_musculus 0 523
ENSMUST00000106779 Ddx5-008 processed_transcript Mus_musculus 0 446
ENSMUST00000151741 Ddx5-005 processed_transcript Mus_musculus 0 431
ENSMUST00000119755 Gm12067-001 processed_pseudogene Mus_musculus 0 329

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