C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540698 DDX5-003 ENSG00000108654 9606 - 17:64499616-64506289 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000540698
Transcript ID Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000540698 23.594±0.00 15.985±0.00 15.085±0.00 33.637±0.00 14.418±0.00 61.118±24.00 52.246±0.00 95.930±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012I CIL_00012I_0001 CGP 17:64477785-64508199
CIL_00012F CIL_00012F_0001 CGP 17:64499616-64542461

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021062 Ddx5-001 protein_coding Mus_musculus 0 2926
ENSMUST00000120566 Gm12183-001 processed_pseudogene Mus_musculus 0 2313
ENSMUST00000133426 Ddx5-002 nonsense_mediated_decay Mus_musculus 0 1554
ENSMUST00000127481 Ddx5-007 nonsense_mediated_decay Mus_musculus 0 841
ENSMUST00000130172 Ddx5-009 processed_transcript Mus_musculus 0 625
ENSMUST00000106778 Ddx5-006 retained_intron Mus_musculus 0 523
ENSMUST00000119755 Gm12067-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000151741 Ddx5-005 processed_transcript Mus_musculus 0 431
ENSMUST00000123339 Ddx5-004 protein_coding Mus_musculus 0 372
ENSMUST00000129585 Ddx5-003 protein_coding Mus_musculus 0 372
ENSMUST00000106779 Ddx5-008 processed_transcript Mus_musculus 0 372

Loading