C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578804 DDX5-005 ENSG00000108654 9606 - 17:64499914-64505956 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainMuscleENST00000578804
Transcript ID Adipose Brain Muscle
ENST00000578804 30.249±0.00 28.014±0.00 6.592±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012I CIL_00012I_0001 CGP 17:64477785-64508199
CIL_00012F CIL_00012F_0001 CGP 17:64499616-64542461

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003712 IEA transcription cofactor activity
GO:0003724 IEA RNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021062 Ddx5-001 protein_coding Mus_musculus 0 2771
ENSMUST00000120566 Gm12183-001 processed_pseudogene Mus_musculus 0 2671
ENSMUST00000133426 Ddx5-002 nonsense_mediated_decay Mus_musculus 0 1729
ENSMUST00000127481 Ddx5-007 nonsense_mediated_decay Mus_musculus 0 841
ENSMUST00000129585 Ddx5-003 protein_coding Mus_musculus 0 701
ENSMUST00000123339 Ddx5-004 protein_coding Mus_musculus 0 640
ENSMUST00000130172 Ddx5-009 processed_transcript Mus_musculus 0 625
ENSMUST00000106778 Ddx5-006 retained_intron Mus_musculus 0 523
ENSMUST00000119755 Gm12067-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000151741 Ddx5-005 processed_transcript Mus_musculus 0 431
ENSMUST00000106779 Ddx5-008 processed_transcript Mus_musculus 0 320

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