C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127481 Ddx5-007 ENSMUSG00000020719 10090 - 11:106781976-106788488 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000127481
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000127481 2798.367±70.51 405.435±180.25 350.018±71.70 70.559±3.98 157.617±33.47 311.029±119.68 774.687±452.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012I CIL_00012I_0002 CGP 11:106768253-106789185
CIL_00012F CIL_00012F_0002 CGP 11:106780355-106819930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0003712 IDA transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0007623 IMP circadian rhythm
GO:0030529 ISO ribonucleoprotein complex
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225792 DDX5-001 protein_coding Homo_sapiens 0 841
ENST00000450599 DDX5-006 protein_coding Homo_sapiens 0 841
ENST00000540698 DDX5-003 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000577922 DDX5-010 protein_coding Homo_sapiens 0 366
ENST00000578190 DDX5-027 protein_coding Homo_sapiens 0 243
ENST00000578400 DDX5-028 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000578758 DDX5-030 retained_intron Homo_sapiens 0 695
ENST00000578804 DDX5-005 protein_coding Homo_sapiens 0 841
ENST00000579091 DDX5-014 protein_coding Homo_sapiens 0 243
ENST00000580026 DDX5-031 processed_transcript Homo_sapiens 0 734
ENST00000581230 DDX5-002 retained_intron Homo_sapiens 0 841
ENST00000581237 DDX5-032 processed_transcript Homo_sapiens 0 606
ENST00000581693 DDX5-004 nonsense_mediated_decay Homo_sapiens 0 841
ENST00000581697 DDX5-012 protein_coding Homo_sapiens 0 243
ENST00000581806 DDX5-009 protein_coding Homo_sapiens 0 243
ENST00000583212 DDX5-015 protein_coding Homo_sapiens 0 241
ENST00000583239 DDX5-013 protein_coding Homo_sapiens 0 243
ENST00000584279 DDX5-011 protein_coding Homo_sapiens 0 366
ENST00000585060 DDX5-026 protein_coding Homo_sapiens 0 243
ENST00000585111 DDX5-008 protein_coding Homo_sapiens 0 244
ENST00000585223 DDX5-025 retained_intron Homo_sapiens 0 370

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