C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129508 Scn1a-002 ENSMUSG00000064329 10090 - 2:66348364-66440814 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0006CL CIL_0006CL_0002 CGP 2:66184327-66440840
CIL_0006CK CIL_0006CK_0002 CGP 2:66270781-66634962

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 272
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 309
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 414
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 272
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 448
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 309
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 309
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 414
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 272
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 473
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 309
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 272
ENST00000453007 SCN3A-003 protein_coding Homo_sapiens 0 272
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 309
ENST00000507401 SCN1A-007 retained_intron Homo_sapiens 0 499

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