C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secreted acidic cysteine rich glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141530 Sparc-003 ENSMUSG00000018593 10090 - 11:55399252-55419898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonOvaryTestisENSMUST00000141530
Transcript ID Adrenal Brain Breast Colon Ovary Testis
ENSMUST00000141530 841.376±55.54 53.338±0.00 445.872±43.32 179.672±35.55 603.256±77.54 176.558±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025X CIL_00025X_0002 CGP 11:55250609-55420080
CIL_0007IC CIL_0007IC_0003 CGP 11:55394500-55461239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0031012 IDA extracellular matrix
GO:0042127 IGI regulation of cell proliferation
GO:0050840 IDA extracellular matrix binding
GO:0060348 IMP bone development
GO:0071363 IDA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135627 sparc-002 protein_coding Danio_rerio 0 291
ENSDART00000039660 sparc-001 protein_coding Danio_rerio 0 291
ENSDART00000141304 sparc-004 protein_coding Danio_rerio 0 267
ENSDART00000142572 sparc-005 retained_intron Danio_rerio 0 237
ENST00000231061 SPARC-001 protein_coding Homo_sapiens 0 693
ENST00000521327 SPARC-003 retained_intron Homo_sapiens 0 237
ENST00000521569 SPARC-005 protein_coding Homo_sapiens 0 545
ENST00000522348 SPARC-004 protein_coding Homo_sapiens 6e-32 141
ENST00000524277 SPARC-006 retained_intron Homo_sapiens 0 460
ENST00000538026 SPARC-008 protein_coding Homo_sapiens 0 460
ENST00000539687 SPARC-007 protein_coding Homo_sapiens 0 366
ENST00000620972 SPARC-201 protein_coding Homo_sapiens 0 651

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