C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00025X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000086570-ENSG00000113140 CGP 9606 5:151504093-151687165
GeneTranscriptPositionBiotype
ENSG00000086570 (FAT2)
FAT atypical cadherin 2 		ENST00000261800 (FAT2-001) 151504094-151568944 protein_coding
ENST00000520200 (FAT2-002) 151504093-151531972 protein_coding
ENSG00000113140 (SPARC)
secreted protein, acidic, cysteine-rich (osteonectin) 		ENST00000231061 (SPARC-001) 151661096-151687165 protein_coding
ENST00000520687 (SPARC-002) 151662488-151667654 retained_intron
ENST00000521327 (SPARC-003) 151672597-151686975 retained_intron
ENST00000521569 (SPARC-005) 151666477-151686968 protein_coding
ENST00000522348 (SPARC-004) 151673178-151686963 protein_coding
ENST00000524277 (SPARC-006) 151667474-151671829 retained_intron
ENST00000537849 (SPARC-009) 151666425-151667584 processed_transcript
ENST00000538026 (SPARC-008) 151666373-151686963 protein_coding
ENST00000539687 (SPARC-007) 151671570-151685230 protein_coding
ENST00000620972 (SPARC-201) 151661100-151685660 protein_coding
ENSG00000260581 (CTB-113P19.4)
 ENST00000564471 (CTB-113P19.4-001) 151652275-151655449 antisense
ENSG00000271795 (CTC-251D13.1)
 ENST00000606930 (CTC-251D13.1-001) 151509453-151512769 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_00025X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055333-ENSMUSG00000018593 CGP 10090 11:55250609-55420080
GeneTranscriptPositionBiotype
ENSMUSG00000018593 (Sparc)
secreted acidic cysteine rich glycoprotein 		ENSMUST00000018737 (Sparc-001) 55394500-55420080 protein_coding
ENSMUST00000108858 (Sparc-002) 55394500-55419898 protein_coding
ENSMUST00000123775 (Sparc-006) 55395386-55399574 processed_transcript
ENSMUST00000125787 (Sparc-004) 55409204-55419900 processed_transcript
ENSMUST00000130642 (Sparc-005) 55395520-55402165 processed_transcript
ENSMUST00000141530 (Sparc-003) 55399252-55419898 protein_coding
ENSMUSG00000055333 (Fat2)
FAT tumor suppressor homolog 2 (Drosophila) 		ENSMUST00000068853 (Fat2-001) 55250609-55336564 protein_coding
ENSMUST00000108864 (Fat2-201) 55250610-55312257 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025X_0001ENSG00000086570ENST00000261800ENST00000520200ENSG00000113140ENST00000231061ENST00000520687ENST00000521327ENST00000521569ENST00000522348ENST00000524277ENST00000537849ENST00000538026ENST00000539687ENST00000620972ENSG00000260581ENST00000564471ENSG00000271795ENST00000606930CIL_00025X_0002ENSMUSG00000018593ENSMUST00000018737ENSMUST00000108858ENSMUST00000123775ENSMUST00000125787ENSMUST00000130642ENSMUST00000141530ENSMUSG00000055333ENSMUST00000068853ENSMUST00000108864
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025X_0001ENSG00000086570ENST00000261800ENST00000520200ENSG00000113140ENST00000231061ENST00000520687ENST00000521569ENST00000620972ENSG00000260581ENST00000564471ENSG00000271795ENST00000606930CIL_00025X_0002ENSMUSG00000018593ENSMUST00000018737ENSMUST00000108858ENSMUST00000130642ENSMUST00000141530ENSMUSG00000055333ENSMUST00000068853ENSMUST00000108864
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000086570 ENST00000261800 N/A N/A N/A N/A 0.718±0.00 N/A N/A 0.005±0.00 0.142±0.00 N/A N/A N/A 0.745±0.00 0.291±0.00
ENST00000520200 N/A N/A N/A N/A 2.172±0.00 N/A 0.017±0.00 0.150±0.11 0.016±0.00 0.145±0.00 N/A 0.355±0.00 0.879±0.30 1.205±0.00
ENSG00000113140 ENST00000231061 N/A N/A 4.687±0.00 13.008±0.00 27.815±0.00 9.551±0.00 9.446±0.00 7.130±0.00 25.349±0.00 14.045±0.00 6.057±0.00 47.682±19.37 147.848±1.09 N/A
ENST00000520687 397.457±0.00 208.181±0.00 11.724±0.00 129.476±0.00 840.924±781.53 173.208±161.60 119.367±0.00 259.317±0.00 53.910±0.00 289.576±263.30 29.152±12.48 413.626±302.70 1320.976±890.89 445.485±60.20
ENST00000521327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521569 N/A N/A 19.296±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.807±10.75 323.088±0.00 86.098±0.00
ENSG00000260581 ENST00000564471 0.075±0.00 0.048±0.00 N/A 0.886±0.00 0.039±0.00 N/A 0.013±0.00 N/A N/A 0.199±0.00 0.096±0.00 0.075±0.02 0.025±0.00 0.948±0.39
ENSG00000271795 ENST00000606930 0.114±0.00 0.180±0.00 N/A 0.127±0.00 N/A N/A 0.014±0.00 N/A N/A 0.077±0.00 0.092±0.05 0.152±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018593 ENSMUST00000018737 188.755±108.31 600.293±52.54 522.189±56.26 23.892±7.87 199.307±60.99 66.005±11.71 N/A 31.281±2.49 19.465±5.35 185.022±28.14 31.809±11.23 165.772±67.83 257.921±62.83 27.732±4.13
ENSMUST00000108858 1075.515±780.70 666.536±208.81 680.218±196.01 34.089±7.82 464.497±120.68 136.978±12.82 98.480±54.36 93.700±45.70 39.419±10.80 635.202±33.23 36.132±8.73 372.586±119.01 445.365±185.15 81.862±46.26
ENSMUST00000123775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130642 1051.618±734.88 522.423±85.55 N/A N/A 397.552±0.00 110.659±10.11 N/A N/A N/A N/A N/A 484.775±61.80 N/A N/A
ENSMUST00000141530 N/A 841.376±55.54 N/A 53.338±0.00 445.872±43.32 179.672±35.55 N/A N/A N/A N/A N/A 603.256±77.54 N/A 176.558±0.00
ENSMUSG00000055333 ENSMUST00000068853 0.000±0.00 N/A N/A N/A 0.171±0.00 0.071±0.01 N/A N/A 0.000±0.00 0.306±0.10 0.002±0.00 N/A 0.002±0.00 N/A
ENSMUST00000108864 0.047±0.04 0.010±0.00 4.687±1.19 0.048±0.03 0.172±0.07 0.103±0.02 0.039±0.02 0.038±0.01 0.004±0.00 0.328±0.06 0.018±0.01 0.061±0.02 0.051±0.06 0.015±0.01

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