C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secreted acidic cysteine rich glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000039660 sparc-001 ENSDARG00000019353 7955 - 14:26948448-26966413 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000039660
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000039660 28.063±4.80 40.392±17.77 91.230±39.14 0.840±0.00 104.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007IC CIL_0007IC_0001 CGP 14:26948448-26995224

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IEA extracellular space
GO:0007165 IEA signal transduction
GO:0030916 IMP otic vesicle formation
GO:0032474 IMP otolith morphogenesis
GO:0048752 IMP semicircular canal morphogenesis
GO:0051216 IMP cartilage development
GO:0060037 IMP pharyngeal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018737 Sparc-001 protein_coding Mus_musculus 0 619
ENSMUST00000108858 Sparc-002 protein_coding Mus_musculus 0 619
ENSMUST00000130642 Sparc-005 processed_transcript Mus_musculus 0 529
ENSMUST00000141530 Sparc-003 protein_coding Mus_musculus 0 291
ENST00000231061 SPARC-001 protein_coding Homo_sapiens 0 571
ENST00000521569 SPARC-005 protein_coding Homo_sapiens 0 333
ENST00000524277 SPARC-006 retained_intron Homo_sapiens 0 303
ENST00000538026 SPARC-008 protein_coding Homo_sapiens 0 425
ENST00000620972 SPARC-201 protein_coding Homo_sapiens 0 571

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