C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146288 Rbm39-021 ENSMUSG00000027620 10090 - 2:156164806-156180159 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainOvaryPlacentaTestisENSMUST00000146288
Transcript ID Adrenal Brain Ovary Placenta Testis
ENSMUST00000146288 22.140±0.00 118.859±0.00 323.573±0.00 208.400±80.80 107.768±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0006351 TAS transcription, DNA-templated
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 0 414
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 651
ENST00000374038 RBM39-020 protein_coding Homo_sapiens 0 651
ENST00000397254 RP6-218J18.2-001 processed_pseudogene Homo_sapiens 0 226
ENST00000397370 RBM39-013 protein_coding Homo_sapiens 0 422
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 1.96182e-44 183
ENST00000416108 RBM39-043 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000416529 RBM39-024 nonsense_mediated_decay Homo_sapiens 1e-24 117
ENST00000425184 RBM39-021 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000426951 RBM39-039 protein_coding Homo_sapiens 0 331
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000433027 RBM39-045 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000434927 RBM39-018 protein_coding Homo_sapiens 0 409
ENST00000442447 RBM39-016 processed_transcript Homo_sapiens 0 335
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000449489 RBM39-044 nonsense_mediated_decay Homo_sapiens 3e-19 99
ENST00000453310 RBM39-012 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000455343 RBM39-019 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000461283 RBM39-009 retained_intron Homo_sapiens 0 315
ENST00000461849 RBM39-014 retained_intron Homo_sapiens 0 340
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 348
ENST00000463098 RBM39-003 processed_transcript Homo_sapiens 0 333
ENST00000477334 RBM39-026 retained_intron Homo_sapiens 0 313
ENST00000481037 RBM39-022 retained_intron Homo_sapiens 0 313
ENST00000493853 RBM39-042 retained_intron Homo_sapiens 3e-21 106
ENST00000528062 RBM39-015 protein_coding Homo_sapiens 0 883

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