C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434910 RP4-775C13.1-001 ENSG00000234241 9606 + 20:6213699-6215381 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000434910
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000434910 0.007±0.00 0.034±0.00 0.014±0.00 0.026±0.00 0.024±0.00 0.007±0.00 0.043±0.00 0.024±0.00 0.011±0.00 0.025±0.00 0.273±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J1 CIL_0001J1_0001 CGP 20:6074845-6780280

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069221 Syncrip-001 protein_coding Mus_musculus 0 2610
ENSMUST00000174282 Syncrip-003 protein_coding Mus_musculus 0 2590
ENSMUST00000173801 Syncrip-002 protein_coding Mus_musculus 0 2538
ENSMUST00000174391 Syncrip-004 protein_coding Mus_musculus 0 2357
ENSMUST00000172828 Syncrip-005 nonsense_mediated_decay Mus_musculus 0 2183
ENSMUST00000187178 RP24-512H17.5-001 processed_pseudogene Mus_musculus 0 1393
ENSMUST00000174361 Syncrip-008 protein_coding Mus_musculus 0 1378
ENSMUST00000174269 Syncrip-006 protein_coding Mus_musculus 0 1378
ENSMUST00000174688 Syncrip-007 protein_coding Mus_musculus 0 1079
ENSMUST00000173405 Syncrip-010 protein_coding Mus_musculus 0 931
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 761
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 761
ENSMUST00000174145 Syncrip-011 retained_intron Mus_musculus 0 586
ENSMUST00000173131 Gm20537-001 nonsense_mediated_decay Mus_musculus 0 499
ENSDART00000132186 syncrip-002 protein_coding Danio_rerio 0 477
ENSMUST00000172508 Syncrip-009 protein_coding Mus_musculus 0 468
ENSMUST00000187770 Syncrip-012 retained_intron Mus_musculus 0 353
ENSMUST00000154586 Gm20537-002 nonsense_mediated_decay Mus_musculus 0 292

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