C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412207 SMARCE1P5-001 ENSG00000230793 9606 + 13:44594858-44596082 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412207
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412207 0.011±0.00 0.253±0.00 0.127±0.00 0.211±0.05 0.049±0.00 0.079±0.00 0.017±0.01 0.206±0.11 0.011±0.00 0.044±0.00 0.032±0.00 0.095±0.06 0.024±0.00 0.375±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103133 Smarce1-001 protein_coding Mus_musculus 0 1515
ENSMUST00000180067 Gm1815-201 processed_pseudogene Mus_musculus 0 1249
ENSMUST00000178171 Gm8494-201 processed_pseudogene Mus_musculus 0 1072
ENSMUST00000116179 Gm11864-001 processed_pseudogene Mus_musculus 0 1064
ENSMUST00000155062 Smarce1-005 processed_transcript Mus_musculus 0 518
ENSMUST00000156160 Smarce1-006 processed_transcript Mus_musculus 0 442
ENSMUST00000121549 Gm12539-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000135040 Smarce1-003 processed_transcript Mus_musculus 0 272
ENSMUST00000128707 Smarce1-004 processed_transcript Mus_musculus 2e-35 154
ENSMUST00000128215 Smarce1-002 processed_transcript Mus_musculus 1e-17 95

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