C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P0 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394878 RPLP0P6-001 ENSG00000213553 9606 + 2:38481851-38482804 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000394878
Transcript ID Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000394878 0.023±0.00 0.117±0.00 0.251±0.08 0.036±0.00 0.069±0.00 0.294±0.08 1.425±0.85 0.424±0.17 0.150±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IR CIL_0002IR_0001 CGP 2:38294880-38603586

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086519 Rplp0-001 protein_coding Mus_musculus 0 1219
ENSMUST00000076373 Gm8730-201 protein_coding Mus_musculus 0 1219
ENSMUST00000180422 Gm9625-001 processed_pseudogene Mus_musculus 0 1214
ENSMUST00000121456 Gm14165-001 processed_pseudogene Mus_musculus 0 1173
ENSMUST00000122125 Rplp0-ps1-001 processed_pseudogene Mus_musculus 0 1031
ENSMUST00000156359 Rplp0-004 protein_coding Mus_musculus 0 922
ENSMUST00000145890 Gucd1-002 nonsense_mediated_decay Mus_musculus 0 874
ENSDART00000073462 rplp0-001 protein_coding Danio_rerio 0 712
ENSMUST00000152976 Rplp0-002 protein_coding Mus_musculus 0 614
ENSMUST00000121323 Gm8199-001 processed_pseudogene Mus_musculus 0 532
ENSDART00000150163 rplp0-002 protein_coding Danio_rerio 0 472
ENSMUST00000155584 Rplp0-003 retained_intron Mus_musculus 0 464
ENSMUST00000118250 Gm8595-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000163928 Gm8338-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000122159 Gm14564-001 processed_pseudogene Mus_musculus 5e-31 137

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