C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252250 KRT6C-001 ENSG00000170465 9606 - 12:52468516-52473785 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastOvaryPlacentaTestisENST00000252250
Transcript ID Adipose Breast Ovary Placenta Testis
ENST00000252250 0.270±0.00 0.009±0.00 30.732±23.31 0.196±0.15 0.024±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000I CGP 12:52446651-52473785
CIL_00033Q CIL_00033Q_000B CGP 12:52468516-52493257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 NAS:IEA intermediate filament
GO:0045095 IEA keratin filament
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 1783
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0 1718
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 1275
ENSMUST00000062879 Gm5414-201 protein_coding Mus_musculus 0 1099
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 0 859
ENSMUST00000023714 4732456N10Rik-001 protein_coding Mus_musculus 0 822
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0 693
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 0 647
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 0 638
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 0 636
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 523
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 521
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 0 444
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 0 405
ENSMUST00000023790 Krt1-201 protein_coding Mus_musculus 0 399
ENSDART00000081215 krt8-001 protein_coding Danio_rerio 0 311
ENSDART00000142261 krt8-002 retained_intron Danio_rerio 5e-39 167
ENSMUST00000179022 Lmnb2-201 protein_coding Mus_musculus 0.000000000000004 88
ENSMUST00000105332 Lmnb2-002 protein_coding Mus_musculus 0.000000000000004 88
ENSMUST00000057623 Lmnb2-001 protein_coding Mus_musculus 0.000000000000004 88

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