C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8807
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179328 Gm8807-201 ENSMUSG00000094153 10090 - 18:75182218-75182709 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000179328
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000179328 0.272±0.14 0.254±0.00 0.143±0.00 0.311±0.02 0.964±0.00 0.256±0.00 0.105±0.00 0.199±0.06 0.057±0.01 0.224±0.05 0.724±0.35 0.118±0.01 0.280±0.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 435
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 604
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 604
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 435
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 604
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 604
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 472
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 259
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 568
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 252
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 601

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