C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522557 HMGB1P1-001 ENSG00000124097 9606 - 20:57488392-57489027 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000522557
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000522557 0.020±0.00 0.178±0.00 0.176±0.00 0.138±0.08 0.344±0.00 0.082±0.00 0.112±0.00 0.111±0.07 0.020±0.00 0.335±0.20 0.123±0.00 0.136±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_00030G CIL_00030G_0001 CGP 20:57391407-57525652

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 815
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 797
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 793
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 791
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 785
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 785
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 785
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 776
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 765
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 763
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 745
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 715
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 713
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 706
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000180890 Gm26585-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 647
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 612
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000179328 Gm8807-201 processed_pseudogene Mus_musculus 0 568
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 508
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 414
ENSMUST00000155086 Hmgb1-009 retained_intron Mus_musculus 0 399
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 377
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000168653 Gm3851-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 5e-19 99

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