C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490788 HMGB1-008 ENSG00000189403 9606 - 13:30462346-30463264 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CF CIL_0004CF_0001 CGP 13:30456704-30660770

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 315
ENSMUST00000155086 Hmgb1-009 retained_intron Mus_musculus 0 315
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 307
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 307
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 307
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 307
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 305
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 296
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 291
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000168653 Gm3851-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000179328 Gm8807-201 processed_pseudogene Mus_musculus 0 259
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 187

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