C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326004 HMGB1-003 ENSG00000189403 9606 - 13:30461496-30465938 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326004
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326004 35.635±0.00 15.953±0.00 32.139±0.00 44.253±0.00 42.145±8.27 2.961±0.00 43.133±0.00 40.134±0.00 34.822±0.00 12.561±0.00 84.285±24.50 28.551±8.96 27.046±12.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CF CIL_0004CF_0001 CGP 13:30456704-30660770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 907
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 907
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 854
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 673
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 673
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 651
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 643
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 566
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 555
ENSMUST00000180890 Gm26585-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 510
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 505
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000179328 Gm8807-201 processed_pseudogene Mus_musculus 0 435
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000155086 Hmgb1-009 retained_intron Mus_musculus 0 431
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000123645 Hmgb1-005 retained_intron Mus_musculus 0 372
ENSMUST00000168653 Gm3851-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 7e-19 99

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