C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558211 HMGB1P8-001 ENSG00000259699 9606 - 15:89135547-89136495 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000558211
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000558211 1.146±0.00 0.619±0.00 0.369±0.34 0.382±0.14 0.475±0.31 0.342±0.01 1.034±0.00 0.217±0.18 1.096±0.00 0.853±0.00 0.425±0.30 0.153±0.00 0.420±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011J CIL_00011J_0001 CGP 15:88898683-89202360
CIL_0002RB CIL_0002RB_0002 CGP 15:89087459-89221751

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 261
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 255
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 255
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 255
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 255
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 255
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 255
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 255
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 255
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 248
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 239
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 228
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 4.00001e-41 172
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 3e-38 163
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 6e-30 135
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 1e-26 124
ENSMUST00000155086 Hmgb1-009 retained_intron Mus_musculus 6e-35 152
ENSMUST00000179328 Gm8807-201 processed_pseudogene Mus_musculus 0 252
ENSMUST00000168653 Gm3851-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 305
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0.00000000000005 82
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 305

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