Transcript ID | Adipose | Adrenal | Brain | Breast | Heart | Kidney | Liver | Muscle | Ovary | Testis |
---|---|---|---|---|---|---|---|---|---|---|
ENST00000341423 | 6.360±0.00 | 10.057±0.00 | 5.479±0.00 | 3.395±1.22 | 1.732±0.00 | 4.826±0.00 | 2.533±0.00 | 1.773±0.00 | 2.721±0.00 | 3.251±0.00 |
Transcript Info |
||||||
Description: | high mobility group box 1 | |||||
---|---|---|---|---|---|---|
Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000341423 | HMGB1-004 | ENSG00000189403 | 9606 | - | 13:30456704-30465965 | protein_coding |
Expression Patterns
|
Conserved Regions | |||
---|---|---|---|
Region ID | Sub-Region | Region Type | Position |
CIL_0004CF | CIL_0004CF_0001 | CGP | 13:30456704-30660770 |
Gene Ontology | ||
---|---|---|
GO ID | Evidence Type | GO Description |
GO:0000122 | IMP | negative regulation of transcription from RNA polymerase II promoter |
GO:0000793 | IDA | condensed chromosome |
GO:0001773 | ISS | myeloid dendritic cell activation |
GO:0002407 | ISS | dendritic cell chemotaxis |
GO:0002437 | IEP | inflammatory response to antigenic stimulus |
GO:0003684 | ISS | damaged DNA binding |
GO:0003690 | ISS | double-stranded DNA binding |
GO:0003697 | ISS | single-stranded DNA binding |
GO:0003700 | IDA | sequence-specific DNA binding transcription factor activity |
GO:0005125 | ISS | cytokine activity |
GO:0005515 | IPI | protein binding |
GO:0005576 | TAS | extracellular region |
GO:0005615 | IDA | extracellular space |
GO:0005634 | IDA | nucleus |
GO:0005654 | TAS | nucleoplasm |
GO:0006265 | ISS | DNA topological change |
GO:0006288 | IDA | base-excision repair, DNA ligation |
GO:0006309 | TAS | apoptotic DNA fragmentation |
GO:0006310 | ISS | DNA recombination |
GO:0006357 | IDA | regulation of transcription from RNA polymerase II promoter |
GO:0006915 | TAS | apoptotic process |
GO:0006921 | TAS | cellular component disassembly involved in execution phase of apoptosis |
GO:0008134 | IPI | transcription factor binding |
GO:0008301 | ISS | DNA binding, bending |
GO:0009986 | IDA | cell surface |
GO:0017053 | IDA | transcriptional repressor complex |
GO:0017055 | IDA | negative regulation of RNA polymerase II transcriptional preinitiation complex assembly |
GO:0031175 | ISS | neuron projection development |
GO:0033151 | IDA | V(D)J recombination |
GO:0042056 | ISS | chemoattractant activity |
GO:0043065 | IDA | positive regulation of apoptotic process |
GO:0043280 | IDA | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process |
GO:0043388 | IDA | positive regulation of DNA binding |
GO:0044822 | IDA | poly(A) RNA binding |
GO:0045087 | TAS | innate immune response |
GO:0045944 | IDA | positive regulation of transcription from RNA polymerase II promoter |
GO:0050786 | ISS | RAGE receptor binding |
GO:0050918 | ISS | positive chemotaxis |
GO:0051103 | ISS | DNA ligation involved in DNA repair |
GO:0070491 | IPI | repressing transcription factor binding |
GO:2000426 | IEA | negative regulation of apoptotic cell clearance |
Homologs | |||||
ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
ENSMUST00000085546 | Hmgb1-001 | protein_coding | Mus_musculus | 0 | 1700 |
ENSMUST00000178049 | Gm21596-201 | processed_pseudogene | Mus_musculus | 0 | 1687 |
ENSMUST00000110505 | Hmgb1-003 | protein_coding | Mus_musculus | 0 | 1467 |
ENSMUST00000093196 | Hmgb1-002 | protein_coding | Mus_musculus | 0 | 1083 |
ENSMUST00000120421 | Gm15387-001 | processed_pseudogene | Mus_musculus | 0 | 904 |
ENSMUST00000084171 | Gm5518-201 | processed_pseudogene | Mus_musculus | 0 | 893 |
ENSMUST00000179479 | Hmgb1-ps9-201 | processed_pseudogene | Mus_musculus | 0 | 893 |
ENSMUST00000179821 | RP24-388H6.4-001 | processed_pseudogene | Mus_musculus | 0 | 876 |
ENSMUST00000173370 | Hmgb1-ps7-001 | processed_pseudogene | Mus_musculus | 0 | 876 |
ENSMUST00000119715 | Gm5937-001 | processed_pseudogene | Mus_musculus | 0 | 861 |
ENSMUST00000139443 | Hmgb1-006 | retained_intron | Mus_musculus | 0 | 856 |
ENSMUST00000118415 | Hmgb1-ps3-001 | processed_pseudogene | Mus_musculus | 0 | 854 |
ENSMUST00000117548 | Hmgb1-ps2-001 | processed_pseudogene | Mus_musculus | 0 | 848 |
ENSMUST00000118281 | Hmgb1-ps4-001 | processed_pseudogene | Mus_musculus | 0 | 828 |
ENSMUST00000120637 | Gm13121-001 | processed_pseudogene | Mus_musculus | 0 | 791 |
ENSMUST00000119927 | Gm12331-001 | processed_pseudogene | Mus_musculus | 0 | 787 |
ENSMUST00000119350 | Hmgb1-ps1-001 | processed_pseudogene | Mus_musculus | 0 | 776 |
ENSMUST00000119503 | Hmgb1-ps6-001 | processed_pseudogene | Mus_musculus | 0 | 771 |
ENSMUST00000176164 | Gm3307-001 | processed_pseudogene | Mus_musculus | 0 | 765 |
ENSMUST00000181542 | Hmgb1-ps8-001 | processed_pseudogene | Mus_musculus | 0 | 754 |
ENSMUST00000179326 | Gm5473-201 | processed_pseudogene | Mus_musculus | 0 | 743 |
ENSMUST00000073196 | Gm10075-201 | pseudogene | Mus_musculus | 0 | 737 |
ENSMUST00000117362 | Gm12568-001 | processed_pseudogene | Mus_musculus | 0 | 730 |
ENSMUST00000121058 | Hmgb1-ps5-001 | processed_pseudogene | Mus_musculus | 0 | 728 |
ENSMUST00000118053 | Gm13379-001 | processed_pseudogene | Mus_musculus | 0 | 725 |
ENSMUST00000119126 | Gm9078-001 | processed_pseudogene | Mus_musculus | 0 | 713 |
ENSMUST00000180890 | Gm26585-001 | processed_pseudogene | Mus_musculus | 0 | 708 |
ENSMUST00000120842 | Gm8152-001 | processed_pseudogene | Mus_musculus | 0 | 704 |
ENSMUST00000120873 | Gm13932-001 | processed_pseudogene | Mus_musculus | 0 | 702 |
ENSMUST00000162030 | AC098736.2-001 | processed_pseudogene | Mus_musculus | 0 | 699 |
ENSMUST00000121589 | Gm11645-001 | processed_pseudogene | Mus_musculus | 0 | 697 |
ENSMUST00000117107 | Gm15560-001 | processed_pseudogene | Mus_musculus | 0 | 678 |
ENSMUST00000117940 | Hmgb1-rs18-001 | processed_pseudogene | Mus_musculus | 0 | 662 |
ENSMUST00000133667 | Hmgb1-004 | retained_intron | Mus_musculus | 0 | 651 |
ENSMUST00000122269 | Gm14473-001 | processed_pseudogene | Mus_musculus | 0 | 645 |
ENSMUST00000190177 | RP24-229N7.1-001 | processed_pseudogene | Mus_musculus | 0 | 640 |
ENSMUST00000118469 | Gm15778-001 | processed_pseudogene | Mus_musculus | 0 | 634 |
ENSMUST00000121009 | Gm14049-001 | processed_pseudogene | Mus_musculus | 0 | 632 |
ENSMUST00000120015 | Gm6461-001 | processed_pseudogene | Mus_musculus | 0 | 628 |
ENSMUST00000117499 | Gm12261-001 | processed_pseudogene | Mus_musculus | 0 | 625 |
ENSMUST00000121222 | Gm5396-001 | processed_pseudogene | Mus_musculus | 0 | 623 |
ENSMUST00000120175 | Gm11830-001 | processed_pseudogene | Mus_musculus | 0 | 623 |
ENSMUST00000184467 | Gm7870-001 | processed_pseudogene | Mus_musculus | 0 | 610 |
ENSMUST00000179328 | Gm8807-201 | processed_pseudogene | Mus_musculus | 0 | 604 |
ENSMUST00000183926 | Gm27254-001 | processed_pseudogene | Mus_musculus | 0 | 586 |
ENSMUST00000182688 | Gm7909-001 | processed_pseudogene | Mus_musculus | 0 | 573 |
ENSMUST00000120970 | Gm15750-001 | processed_pseudogene | Mus_musculus | 0 | 569 |
ENSMUST00000138553 | Hmgb1-007 | protein_coding | Mus_musculus | 0 | 555 |
ENSMUST00000119766 | Gm12118-001 | processed_pseudogene | Mus_musculus | 0 | 549 |
ENSMUST00000125605 | Hmgb1-008 | protein_coding | Mus_musculus | 0 | 510 |
ENSMUST00000186576 | RP24-241N3.1-001 | processed_pseudogene | Mus_musculus | 0 | 448 |
ENSMUST00000155086 | Hmgb1-009 | retained_intron | Mus_musculus | 0 | 433 |
ENSMUST00000168653 | Gm3851-001 | processed_pseudogene | Mus_musculus | 0 | 377 |
ENSMUST00000120168 | Gm13902-001 | processed_pseudogene | Mus_musculus | 0 | 374 |
ENSMUST00000123645 | Hmgb1-005 | retained_intron | Mus_musculus | 0 | 372 |
ENSMUST00000155154 | Ppm1e-002 | processed_transcript | Mus_musculus | 0 | 303 |
ENSMUST00000116383 | Gm14448-001 | processed_pseudogene | Mus_musculus | 0 | 261 |
ENSMUST00000189012 | RP23-338I1.1-001 | processed_pseudogene | Mus_musculus | 1.99965e-42 | 180 |
ENSMUST00000128343 | Gm3160-001 | processed_pseudogene | Mus_musculus | 5e-18 | 99 |