C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 26585
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180890 Gm26585-001 ENSMUSG00000097473 10090 - 10:22452891-22453520 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverOvaryPlacentaENSMUST00000180890
Transcript ID Bladder Brain Liver Ovary Placenta
ENSMUST00000180890 0.028±0.00 0.030±0.00 0.001±0.00 0.071±0.00 0.081±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 715
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 553
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 708
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 708
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 553
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 708
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 708
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 545
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 527
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 217
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 664
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 688

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