C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255320 HMGB1P5-001 ENSG00000132967 9606 + 3:22381819-22382460 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverLungOvaryENST00000255320
Transcript ID Brain Breast Liver Lung Ovary
ENST00000255320 0.198±0.00 0.742±0.00 0.084±0.01 0.204±0.00 0.994±0.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 870
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 865
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 865
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 865
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 865
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 859
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 854
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 854
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 848
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 843
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 843
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 795
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 784
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 749
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000180890 Gm26585-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 651
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 536
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 442
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 411
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 5e-19 99

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