C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5706
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181525 Gm5706-001 ENSMUSG00000097260 10090 - 1:182392543-182393535 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLungOvaryPlacentaTestisENSMUST00000181525
Transcript ID Adipose Bladder Breast Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000181525 0.033±0.00 0.055±0.00 0.093±0.02 0.039±0.01 0.033±0.00 0.465±0.09 0.047±0.00 0.075±0.04 0.054±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0002 VISTA 1:181809962-182412053

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 846
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 627
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 826
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 846
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 846
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 573
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 590
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 278
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 440
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 569
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 776
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 645
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 510
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 529
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 425
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 316
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 222
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 627
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 627
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 623
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 590
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 556
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 689
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 431
ENST00000511530 GAPDHP71-001 processed_pseudogene Homo_sapiens 0 614
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 233
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 634
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 667
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 412
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 575
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 492
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 492
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 739

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