C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186255 Ptma-005 ENSMUSG00000026238 10090 + 1:86526736-86530371 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000186255
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000186255 67.866±0.00 384.717±0.00 255.696±135.22 27.813±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FJ CIL_0007FJ_0002 CGP 1:86426329-86530712
CIL_0007FM CIL_0007FM_0002 CGP 1:86526726-86582629

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341369 PTMA-002 protein_coding Homo_sapiens 0 547
ENST00000393073 PTMAP5-001 transcribed_processed_pseudogene Homo_sapiens 6.02558e-44 182
ENST00000397627 PTMAP2-001 processed_pseudogene Homo_sapiens 9.99995e-41 171
ENST00000409115 PTMA-001 protein_coding Homo_sapiens 0 547
ENST00000409321 PTMA-012 protein_coding Homo_sapiens 0 392
ENST00000409683 PTMA-007 protein_coding Homo_sapiens 0 538
ENST00000410064 PTMA-004 protein_coding Homo_sapiens 5.60519e-45 185
ENST00000412128 PTMA-008 protein_coding Homo_sapiens 0 547
ENST00000448874 PTMA-011 nonsense_mediated_decay Homo_sapiens 0 547
ENST00000466801 PTMA-013 processed_transcript Homo_sapiens 0 298
ENST00000468027 PTMA-006 retained_intron Homo_sapiens 0 261
ENST00000481928 PTMA-003 retained_intron Homo_sapiens 0 547
ENST00000556323 RP11-529H20.3-001 processed_pseudogene Homo_sapiens 3e-37 159
ENST00000607242 PTMAP5-002 processed_transcript Homo_sapiens 0 534
ENST00000612829 PTMA-201 protein_coding Homo_sapiens 0 547

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