C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007FJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000177673-ENSG00000187514 CGP 9606 2:231592901-231713541
GeneTranscriptPositionBiotype
ENSG00000177673 (C2orf57)
chromosome 2 open reading frame 57 		ENST00000313965 (C2orf57-001) 231592901-231594283 protein_coding
ENSG00000187514 (PTMA)
prothymosin, alpha 		ENST00000341369 (PTMA-002) 231708516-231713536 protein_coding
ENST00000409115 (PTMA-001) 231708509-231713541 protein_coding
ENST00000409321 (PTMA-012) 231707684-231713108 protein_coding
ENST00000409683 (PTMA-007) 231708536-231713289 protein_coding
ENST00000410064 (PTMA-004) 231709781-231712856 protein_coding
ENST00000412128 (PTMA-008) 231710427-231713268 protein_coding
ENST00000440384 (PTMA-009) 231710491-231711383 protein_coding
ENST00000448874 (PTMA-011) 231707630-231713465 nonsense_mediated_decay
ENST00000466801 (PTMA-013) 231706895-231713013 processed_transcript
ENST00000467816 (PTMA-010) 231711131-231711978 retained_intron
ENST00000468027 (PTMA-006) 231708530-231712675 retained_intron
ENST00000481928 (PTMA-003) 231708530-231713506 retained_intron
ENST00000612829 (PTMA-201) 231710179-231713539 protein_coding
ENSG00000239202 (RN7SL499P)
RNA, 7SL, cytoplasmic 499, pseudogene 		ENST00000481141 (RN7SL499P-201) 231645998-231646273 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007FJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036574-ENSMUSG00000026238 CGP 10090 1:86426329-86530712
GeneTranscriptPositionBiotype
ENSMUSG00000026238 (Ptma)
prothymosin alpha 		ENSMUST00000045897 (Ptma-001) 86526726-86530712 protein_coding
ENSMUST00000186255 (Ptma-005) 86526736-86530371 protein_coding
ENSMUST00000186932 (Ptma-004) 86526741-86529745 processed_transcript
ENSMUST00000188533 (Ptma-006) 86526807-86530209 protein_coding
ENSMUST00000188699 (Ptma-003) 86526737-86529527 protein_coding
ENSMUSG00000036574 (1700019O17Rik)
RIKEN cDNA 1700019O17 gene 		ENSMUST00000046004 (1700019O17Rik-001) 86426329-86428052 protein_coding
ENSMUSG00000101328 (RP23-403I3.6)
ribosomal protein L30, pseudogene 6 		ENSMUST00000163337 (RP23-403I3.6-001) 86473659-86474006 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007FJ_0001ENSG00000177673ENST00000313965ENSG00000187514ENST00000341369ENST00000409115ENST00000409321ENST00000409683ENST00000410064ENST00000412128ENST00000440384ENST00000448874ENST00000466801ENST00000467816ENST00000468027ENST00000481928ENST00000612829ENSG00000239202ENST00000481141CIL_0007FJ_0002ENSMUSG00000026238ENSMUST00000045897ENSMUST00000186255ENSMUST00000186932ENSMUST00000188533ENSMUST00000188699ENSMUSG00000036574ENSMUST00000046004ENSMUSG00000101328ENSMUST00000163337
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007FJ_0001ENSG00000177673ENST00000313965ENSG00000187514ENST00000341369ENST00000409115ENST00000409321ENST00000412128ENST00000448874ENST00000468027ENSG00000239202ENST00000481141CIL_0007FJ_0002ENSMUSG00000026238ENSMUST00000045897ENSMUST00000186255ENSMUST00000186932ENSMUST00000188533ENSMUSG00000036574ENSMUST00000046004ENSMUSG00000101328ENSMUST00000163337
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000177673 ENST00000313965 N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.743±6.94
ENSG00000187514 ENST00000341369 80.361±0.00 180.379±0.00 N/A 39.649±0.00 53.952±0.00 68.159±48.25 10.620±0.00 28.173±17.18 26.361±3.30 113.411±0.00 11.373±0.00 56.454±27.40 N/A 37.816±21.83
ENST00000409115 122.209±0.00 N/A 46.702±0.00 67.536±0.00 78.213±33.72 83.663±11.37 13.461±3.74 57.024±0.00 121.342±0.00 92.846±0.00 11.633±2.63 290.321±203.68 473.141±139.84 59.044±13.44
ENST00000409321 327.208±0.00 685.156±0.00 N/A 193.071±0.00 233.502±0.00 476.133±0.00 26.189±0.00 159.180±0.00 71.081±0.00 445.599±0.00 25.577±0.00 515.543±0.00 N/A 220.026±0.00
ENST00000409683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412128 144.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.086±0.00
ENST00000440384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448874 N/A 157.790±0.00 N/A 107.436±0.00 77.497±0.00 187.846±0.00 36.026±0.00 215.827±0.00 68.344±0.00 292.331±0.00 23.597±0.00 54.392±0.00 N/A 135.871±0.00
ENST00000466801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468027 N/A N/A N/A 47.582±0.00 N/A N/A 11.134±0.00 N/A N/A N/A N/A 54.892±0.00 N/A N/A
ENST00000481928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239202 ENST00000481141 N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A 0.055±0.00 0.059±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026238 ENSMUST00000045897 177.464±110.53 266.963±42.93 447.005±23.43 582.882±376.47 148.722±59.38 186.215±41.38 39.725±5.95 159.275±14.21 535.461±608.00 208.762±0.93 28.223±4.40 465.811±174.20 439.963±263.40 34.169±9.98
ENSMUST00000186255 N/A N/A N/A 67.866±0.00 N/A N/A N/A N/A N/A N/A N/A 384.717±0.00 255.696±135.22 27.813±0.00
ENSMUST00000186932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 224.449±0.00
ENSMUST00000188533 N/A N/A N/A N/A N/A N/A N/A N/A 165.892±0.00 N/A N/A N/A N/A 29.484±0.00
ENSMUST00000188699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036574 ENSMUST00000046004 N/A N/A 0.005±0.00 0.006±0.00 0.021±0.00 N/A 0.049±0.03 0.020±0.01 0.010±0.00 0.050±0.03 N/A 0.059±0.02 0.019±0.01 60.609±4.37
ENSMUSG00000101328 ENSMUST00000163337 0.219±0.00 N/A N/A 0.272±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 0.443±0.09

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