C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 28580
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186767 RP24-468E2.1-001 ENSMUSG00000101730 10090 - 1:70067968-70068055 unprocessed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000186767
Transcript ID Testis
ENSMUST00000186767 141.296±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PB CIL_0006PB_0002 CGP 1:69531214-70725132
CIL_0005MG CIL_0005MG_0002 CGP 1:69826970-70885397

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 5e-28 130
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 4e-28 130
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 4e-28 130
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 4e-28 130
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 4e-28 130
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 3e-28 130
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 1e-27 128
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 6e-30 135
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 1e-21 108
ENST00000447061 GAPDHP25-001 processed_pseudogene Homo_sapiens 1e-22 111
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 1e-26 124
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 6e-25 119
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 5e-28 130
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 4e-28 130
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 4e-28 130
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 3e-23 113
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 5e-26 122
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 3e-22 108
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 2e-24 117
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 1e-26 124
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 2e-19 100
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 3e-28 130

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