C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448913 TARDBPP2-001 ENSG00000238213 9606 + 13:60274776-60276006 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLungOvaryTestisENST00000448913
Transcript ID Adipose Adrenal Breast Kidney Lung Ovary Testis
ENST00000448913 0.010±0.00 0.064±0.00 0.043±0.00 0.032±0.00 0.040±0.00 0.013±0.00 0.022±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MG CIL_0000MG_0001 CGP 13:59665583-60573878

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084125 Tardbp-001 protein_coding Mus_musculus 0 1426
ENSMUST00000117876 Gm13886-001 processed_pseudogene Mus_musculus 0 1181
ENSMUST00000172073 Tardbp-203 protein_coding Mus_musculus 0 983
ENSMUST00000095719 Tardbp-007 protein_coding Mus_musculus 0 977
ENSMUST00000105702 Tardbp-201 protein_coding Mus_musculus 0 952
ENSMUST00000165113 Tardbp-202 protein_coding Mus_musculus 0 950
ENSMUST00000045180 Tardbp-002 nonsense_mediated_decay Mus_musculus 0 950
ENSMUST00000188134 Tardbp-024 nonsense_mediated_decay Mus_musculus 0 950
ENSMUST00000105700 Tardbp-003 protein_coding Mus_musculus 0 946
ENSMUST00000190696 Tardbp-011 nonsense_mediated_decay Mus_musculus 0 944
ENSMUST00000189048 Tardbp-012 protein_coding Mus_musculus 0 944
ENSMUST00000191450 Tardbp-009 nonsense_mediated_decay Mus_musculus 0 935
ENSMUST00000105699 Tardbp-006 protein_coding Mus_musculus 0 933
ENSMUST00000186947 Tardbp-015 protein_coding Mus_musculus 0 652
ENSMUST00000185824 Tardbp-016 protein_coding Mus_musculus 0 628
ENSMUST00000185673 Tardbp-014 protein_coding Mus_musculus 0 534
ENSMUST00000140897 Tardbp-004 nonsense_mediated_decay Mus_musculus 0 422
ENSMUST00000191378 Tardbp-018 nonsense_mediated_decay Mus_musculus 0 420
ENSMUST00000187939 Tardbp-019 protein_coding Mus_musculus 0 333
ENSMUST00000190630 Tardbp-021 protein_coding Mus_musculus 0 255
ENSMUST00000147391 Tardbp-005 nonsense_mediated_decay Mus_musculus 3e-34 150
ENSMUST00000188488 Tardbp-022 protein_coding Mus_musculus 6e-31 139
ENSMUST00000186711 Tardbp-025 protein_coding Mus_musculus 0.00000001 66
ENSDART00000000908 ttnb-201 protein_coding Danio_rerio 0.00008 53
ENSDART00000141122 ttnb-002 protein_coding Danio_rerio 0.00008 53

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