C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439080 TARDBP-011 ENSG00000120948 9606 + 1:11012653-11022858 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000439080
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000439080 23.679±0.00 23.591±0.00 3.250±0.00 16.309±0.00 13.950±0.00 19.037±0.00 15.212±0.00 23.064±0.00 2.501±0.00 16.522±0.00 7.660±5.67 26.597±0.00 22.622±5.65 26.258±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082Y CIL_00082Y_0001 VISTA 1:10421182-11021687
CIL_0008S2 CIL_0008S2_0001 VISTA 1:10435049-11039184
CIL_0008RU CIL_0008RU_0001 VISTA 1:10491513-11092116
CIL_0008JG CIL_0008JG_0001 VISTA 1:10565145-11165671
CIL_0008JY CIL_0008JY_0001 VISTA 1:10605072-11206087
CIL_00019T CIL_00019T_0002 CGP 1:10946471-11026420

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190696 Tardbp-011 nonsense_mediated_decay Mus_musculus 0 1633
ENSMUST00000084125 Tardbp-001 protein_coding Mus_musculus 0 1275
ENSMUST00000117876 Gm13886-001 processed_pseudogene Mus_musculus 0 876
ENSMUST00000172073 Tardbp-203 protein_coding Mus_musculus 0 599
ENSMUST00000095719 Tardbp-007 protein_coding Mus_musculus 0 599
ENSMUST00000105702 Tardbp-201 protein_coding Mus_musculus 0 568
ENSMUST00000105700 Tardbp-003 protein_coding Mus_musculus 0 568
ENSMUST00000165113 Tardbp-202 protein_coding Mus_musculus 0 566
ENSMUST00000189048 Tardbp-012 protein_coding Mus_musculus 0 566
ENSMUST00000045180 Tardbp-002 nonsense_mediated_decay Mus_musculus 0 566
ENSMUST00000188134 Tardbp-024 nonsense_mediated_decay Mus_musculus 0 566
ENSMUST00000191450 Tardbp-009 nonsense_mediated_decay Mus_musculus 0 551
ENSMUST00000185824 Tardbp-016 protein_coding Mus_musculus 0 549
ENSMUST00000105699 Tardbp-006 protein_coding Mus_musculus 0 549
ENSMUST00000190552 Tardbp-017 nonsense_mediated_decay Mus_musculus 0 549
ENSMUST00000140897 Tardbp-004 nonsense_mediated_decay Mus_musculus 0 508
ENSMUST00000191378 Tardbp-018 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000187939 Tardbp-019 protein_coding Mus_musculus 0 392
ENSMUST00000190478 Tardbp-013 retained_intron Mus_musculus 0 366
ENSMUST00000186947 Tardbp-015 protein_coding Mus_musculus 0 363
ENSMUST00000185673 Tardbp-014 protein_coding Mus_musculus 0 348
ENSMUST00000147391 Tardbp-005 nonsense_mediated_decay Mus_musculus 0 344
ENSMUST00000190630 Tardbp-021 protein_coding Mus_musculus 0 287
ENSMUST00000186729 Tardbp-023 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000188488 Tardbp-022 protein_coding Mus_musculus 4.99983e-42 176
ENSMUST00000186711 Tardbp-025 protein_coding Mus_musculus 0.00000001 66

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