C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315091 TARDBP-003 ENSG00000120948 9606 + 1:11013716-11024183 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000315091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000315091 27.214±0.00 32.965±0.00 2.167±0.00 9.024±6.89 23.912±0.00 16.599±13.19 15.673±0.00 29.118±0.00 15.946±11.17 9.012±6.87 44.512±7.27 28.377±2.51 31.185±6.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082Y CIL_00082Y_0001 VISTA 1:10421182-11021687
CIL_0008S2 CIL_0008S2_0001 VISTA 1:10435049-11039184
CIL_0008RU CIL_0008RU_0001 VISTA 1:10491513-11092116
CIL_0008JG CIL_0008JG_0001 VISTA 1:10565145-11165671
CIL_0008JY CIL_0008JY_0001 VISTA 1:10605072-11206087
CIL_00019T CIL_00019T_0002 CGP 1:10946471-11026420

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105699 Tardbp-006 protein_coding Mus_musculus 0 2643
ENSMUST00000165113 Tardbp-202 protein_coding Mus_musculus 0 2603
ENSMUST00000172073 Tardbp-203 protein_coding Mus_musculus 0 2514
ENSMUST00000084125 Tardbp-001 protein_coding Mus_musculus 0 1539
ENSMUST00000189048 Tardbp-012 protein_coding Mus_musculus 0 1476
ENSMUST00000105702 Tardbp-201 protein_coding Mus_musculus 0 1413
ENSMUST00000045180 Tardbp-002 nonsense_mediated_decay Mus_musculus 0 1282
ENSMUST00000188134 Tardbp-024 nonsense_mediated_decay Mus_musculus 0 1282
ENSMUST00000095719 Tardbp-007 protein_coding Mus_musculus 0 1208
ENSMUST00000191450 Tardbp-009 nonsense_mediated_decay Mus_musculus 0 1107
ENSMUST00000105700 Tardbp-003 protein_coding Mus_musculus 0 1099
ENSMUST00000186711 Tardbp-025 protein_coding Mus_musculus 0 989
ENSMUST00000117876 Gm13886-001 processed_pseudogene Mus_musculus 0 872
ENSMUST00000190552 Tardbp-017 nonsense_mediated_decay Mus_musculus 0 811
ENSMUST00000186947 Tardbp-015 protein_coding Mus_musculus 0 756
ENSMUST00000185824 Tardbp-016 protein_coding Mus_musculus 0 739
ENSMUST00000190630 Tardbp-021 protein_coding Mus_musculus 0 652
ENSMUST00000185673 Tardbp-014 protein_coding Mus_musculus 0 623
ENSMUST00000190696 Tardbp-011 nonsense_mediated_decay Mus_musculus 0 549
ENSMUST00000140897 Tardbp-004 nonsense_mediated_decay Mus_musculus 0 490
ENSMUST00000186729 Tardbp-023 nonsense_mediated_decay Mus_musculus 0 483
ENSMUST00000191378 Tardbp-018 nonsense_mediated_decay Mus_musculus 0 481
ENSMUST00000187937 Tardbp-028 processed_transcript Mus_musculus 0 449
ENSMUST00000187939 Tardbp-019 protein_coding Mus_musculus 0 374
ENSMUST00000190478 Tardbp-013 retained_intron Mus_musculus 0 348
ENSMUST00000190287 Tardbp-020 nonsense_mediated_decay Mus_musculus 0 219
ENSMUST00000147391 Tardbp-005 nonsense_mediated_decay Mus_musculus 0 219
ENSMUST00000186317 Tardbp-027 processed_transcript Mus_musculus 0 219
ENSMUST00000189041 Tardbp-026 processed_transcript Mus_musculus 0 219
ENSMUST00000188488 Tardbp-022 protein_coding Mus_musculus 7e-37 159

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