C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000104364 rps15-001 ENSDARG00000070849 7955 + 11:5961412-5966184 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000104364
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000104364 104.288±113.65 941.106±376.55 107.005±134.51 549.070±0.00 836.354±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZD CIL_0005ZD_0001 CGP 11:5915124-5966184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0009790 IMP embryo development
GO:0015935 IEA small ribosomal subunit
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062674 Rps15-002 protein_coding Mus_musculus 0 398
ENSMUST00000068408 Rps15-001 protein_coding Mus_musculus 0 403
ENSMUST00000121788 Rps15-ps2-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000169588 Gm4775-201 protein_coding Mus_musculus 0 206
ENST00000233609 RPS15-006 protein_coding Homo_sapiens 0 438
ENST00000412567 RP11-389O22.5-001 processed_pseudogene Homo_sapiens 0 348
ENST00000422958 RP5-827C21.1-001 processed_pseudogene Homo_sapiens 0 403
ENST00000433675 AC007969.5-001 processed_pseudogene Homo_sapiens 0 401
ENST00000449885 RPS15P5-001 processed_pseudogene Homo_sapiens 0 364
ENST00000493323 RP11-264F23.1-001 processed_pseudogene Homo_sapiens 0 311
ENST00000522454 CTC-340A15.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000585665 RPS15-010 protein_coding Homo_sapiens 0 403
ENST00000586096 RPS15-011 protein_coding Homo_sapiens 0 350
ENST00000586686 RPS15-009 protein_coding Homo_sapiens 0 344
ENST00000591032 RPS15-008 protein_coding Homo_sapiens 0 344
ENST00000591804 RPS15-013 protein_coding Homo_sapiens 0 344
ENST00000592588 RPS15-001 protein_coding Homo_sapiens 0 444
ENST00000592623 RPS15-012 protein_coding Homo_sapiens 0 438
ENST00000592700 RPS15-003 retained_intron Homo_sapiens 0 344
ENST00000593052 RPS15-002 protein_coding Homo_sapiens 0 438

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