C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basic transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335895 BTF3-001 ENSG00000145741 9606 + 5:73498408-73505495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335895
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335895 282.334±0.00 259.968±0.00 8.151±0.00 90.201±56.89 128.441±87.98 192.020±151.94 76.252±61.74 101.466±60.31 79.138±24.97 163.469±123.38 157.695±126.29 308.946±208.38 283.341±69.34 158.124±86.86

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0015031 IEA protein transport
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152704 Btf3-002 protein_coding Mus_musculus 0 1173
ENSMUST00000022163 Btf3-001 protein_coding Mus_musculus 0 1033
ENSMUST00000134542 Btf3-003 protein_coding Mus_musculus 0 987
ENSMUST00000162698 Gm3531-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000133826 Btf3-004 retained_intron Mus_musculus 0 721
ENSMUST00000139070 Gm7613-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000122107 Gm7973-001 processed_pseudogene Mus_musculus 0 691
ENSMUST00000058881 Gm5341-201 processed_pseudogene Mus_musculus 0 601
ENSMUST00000117114 Gm12142-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000121665 Gm13440-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117560 Gm7834-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000133461 Btf3-005 retained_intron Mus_musculus 0 449
ENSMUST00000191444 RP23-130K20.4-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000119073 Gm9308-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000117948 Gm11698-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000189001 RP23-247F18.2-001 processed_pseudogene Mus_musculus 0 230

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