C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141102 Sox5-009 ENSMUSG00000041540 10090 - 6:143843739-144781977 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverLungMuscleOvaryPlacentaENSMUST00000141102
Transcript ID Bladder Breast Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000141102 0.580±0.00 0.365±0.00 0.293±0.02 0.846±0.00 0.934±0.27 0.033±0.01 2.990±0.00 0.340±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y0 CIL_0006Y0_0003 CGP 6:143167230-144781977
CIL_0007NR CIL_0007NR_0002 UCNEbase 6:143260703-144754208
CIL_0004XB CIL_0004XB_0002 CGP 6:143828425-145076184

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006737 sox5-201 protein_coding Danio_rerio 8e-23 113
ENSDART00000134595 sox5-001 protein_coding Danio_rerio 8e-23 113
ENST00000367206 SOX5-006 nonsense_mediated_decay Homo_sapiens 0 1310
ENST00000381381 SOX5-201 protein_coding Homo_sapiens 0 1314
ENST00000396007 SOX5-001 protein_coding Homo_sapiens 0 568
ENST00000441133 SOX5-004 protein_coding Homo_sapiens 0 268
ENST00000451604 SOX5-002 protein_coding Homo_sapiens 0 1314
ENST00000524155 SOX5P-001 processed_pseudogene Homo_sapiens 0 436
ENST00000535530 SOX5-014 processed_transcript Homo_sapiens 0 383
ENST00000536629 SOX5-015 processed_transcript Homo_sapiens 0 385
ENST00000536911 SOX5-013 retained_intron Homo_sapiens 0 322
ENST00000537393 SOX5-008 protein_coding Homo_sapiens 0 953
ENST00000538083 SOX5-010 protein_coding Homo_sapiens 0 617
ENST00000541536 SOX5-009 protein_coding Homo_sapiens 0 1315
ENST00000541847 SOX5-016 protein_coding Homo_sapiens 0 937
ENST00000542241 SOX5-012 processed_transcript Homo_sapiens 0 274
ENST00000545921 SOX5-007 protein_coding Homo_sapiens 0 1310
ENST00000546136 SOX5-003 protein_coding Homo_sapiens 0 1314

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