C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111748 Sox5-003 ENSMUSG00000041540 10090 - 6:143828425-143947106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungMuscleOvaryPlacentaTestisENSMUST00000111748
Transcript ID Adrenal Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000111748 0.877±0.05 0.529±0.00 0.203±0.07 0.386±0.26 1.617±0.00 0.076±0.02 2.480±1.01 0.247±0.00 6.947±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y0 CIL_0006Y0_0003 CGP 6:143167230-144781977
CIL_0007NR CIL_0007NR_0002 UCNEbase 6:143260703-144754208
CIL_0004XB CIL_0004XB_0002 CGP 6:143828425-145076184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0021953 IGI central nervous system neuron differentiation
GO:0032332 IDA positive regulation of chondrocyte differentiation
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044798 IDA nuclear transcription factor complex
GO:0045165 IGI cell fate commitment
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity
GO:0048709 IMP oligodendrocyte differentiation
GO:0051216 IGI cartilage development
GO:0060164 IMP regulation of timing of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000134595 sox5-001 protein_coding Danio_rerio 1e-18 100
ENST00000367206 SOX5-006 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000381381 SOX5-201 protein_coding Homo_sapiens 0 1511
ENST00000396007 SOX5-001 protein_coding Homo_sapiens 0 1659
ENST00000451604 SOX5-002 protein_coding Homo_sapiens 0 1908
ENST00000524155 SOX5P-001 processed_pseudogene Homo_sapiens 0 1061
ENST00000535530 SOX5-014 processed_transcript Homo_sapiens 1e-30 137
ENST00000536629 SOX5-015 processed_transcript Homo_sapiens 1e-30 137
ENST00000536911 SOX5-013 retained_intron Homo_sapiens 1e-30 137
ENST00000537393 SOX5-008 protein_coding Homo_sapiens 0 1908
ENST00000541536 SOX5-009 protein_coding Homo_sapiens 0 1493
ENST00000542241 SOX5-012 processed_transcript Homo_sapiens 0 274
ENST00000545921 SOX5-007 protein_coding Homo_sapiens 0 1644
ENST00000546136 SOX5-003 protein_coding Homo_sapiens 0 1908

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