C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038815 Sox5-001 ENSMUSG00000041540 10090 - 6:143828425-144209480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverPlacentaENSMUST00000038815
Transcript ID Bladder Brain Breast Liver Placenta
ENSMUST00000038815 0.354±0.00 3.571±2.44 0.273±0.17 0.461±0.22 0.238±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y0 CIL_0006Y0_0003 CGP 6:143167230-144781977
CIL_0007NR CIL_0007NR_0002 UCNEbase 6:143260703-144754208
CIL_0004XB CIL_0004XB_0002 CGP 6:143828425-145076184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0021953 IGI central nervous system neuron differentiation
GO:0032332 IEA positive regulation of chondrocyte differentiation
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044798 IDA nuclear transcription factor complex
GO:0045165 IGI cell fate commitment
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity
GO:0048709 IMP oligodendrocyte differentiation
GO:0051216 IGI cartilage development
GO:0060164 IMP regulation of timing of neuron differentiation
GO:0061036 IEA positive regulation of cartilage development
GO:0071560 IEA cellular response to transforming growth factor beta stimulus
GO:2000741 IEA positive regulation of mesenchymal stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006737 sox5-201 protein_coding Danio_rerio 5e-34 152
ENSDART00000134595 sox5-001 protein_coding Danio_rerio 8e-32 145
ENST00000367206 SOX5-006 nonsense_mediated_decay Homo_sapiens 0 1936
ENST00000381381 SOX5-201 protein_coding Homo_sapiens 0 1740
ENST00000396007 SOX5-001 protein_coding Homo_sapiens 0 1655
ENST00000441133 SOX5-004 protein_coding Homo_sapiens 0 357
ENST00000451604 SOX5-002 protein_coding Homo_sapiens 0 3640
ENST00000524155 SOX5P-001 processed_pseudogene Homo_sapiens 0 1059
ENST00000535530 SOX5-014 processed_transcript Homo_sapiens 0 606
ENST00000536629 SOX5-015 processed_transcript Homo_sapiens 0 649
ENST00000536850 SOX5-011 processed_transcript Homo_sapiens 0.00001 55
ENST00000536911 SOX5-013 retained_intron Homo_sapiens 0 545
ENST00000537393 SOX5-008 protein_coding Homo_sapiens 0 3079
ENST00000538083 SOX5-010 protein_coding Homo_sapiens 0 617
ENST00000541536 SOX5-009 protein_coding Homo_sapiens 0 1539
ENST00000541847 SOX5-016 protein_coding Homo_sapiens 0 937
ENST00000542241 SOX5-012 processed_transcript Homo_sapiens 0 499
ENST00000545921 SOX5-007 protein_coding Homo_sapiens 0 3171
ENST00000546136 SOX5-003 protein_coding Homo_sapiens 0 3439

Loading