C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13 pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392730 RPL13P12-001 ENSG00000215030 9606 - 17:17383377-17384012 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392730
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392730 18.861±0.00 4.370±0.00 0.257±0.00 0.929±0.73 2.084±0.26 3.680±0.02 2.099±1.89 0.678±0.27 1.151±0.18 2.044±0.75 8.558±7.30 2.541±1.65 27.062±35.65 1.152±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0001 VISTA 17:17235872-17840873
CIL_0000NW CIL_0000NW_0001 CGP 17:17303335-17493226

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120234 Gm12918-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000000756 Rpl13-001 protein_coding Mus_musculus 0 704
ENSMUST00000121821 Gm15710-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000079761 Gm10071-201 processed_pseudogene Mus_musculus 0 688
ENSMUST00000079960 Rpl13-ps3-201 protein_coding Mus_musculus 0 588
ENSMUST00000104990 Gm7290-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000132275 Rpl13-004 retained_intron Mus_musculus 0 564
ENSMUST00000121199 Gm12466-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000117813 Rpl13-ps5-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000119124 Gm15131-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000129311 Rpl13-002 retained_intron Mus_musculus 0 311
ENSMUST00000119734 Gm12011-001 processed_pseudogene Mus_musculus 0 302

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