C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079960 Rpl13-ps3-201 ENSMUSG00000059835 10090 + 14:58893506-58894129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079960
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079960 0.318±0.07 0.137±0.03 6.113±5.83 1.598±1.52 0.282±0.12 0.102±0.02 0.311±0.10 0.133±0.10 4.478±4.04 0.156±0.08 0.290±0.20 0.585±0.37 0.180±0.21 0.364±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311528 RPL13-001 protein_coding Homo_sapiens 0 599
ENST00000392730 RPL13P12-001 processed_pseudogene Homo_sapiens 0 588
ENST00000393099 RPL13-002 protein_coding Homo_sapiens 0 599
ENST00000396818 RPL13P-001 processed_pseudogene Homo_sapiens 0 353
ENST00000399461 RPL13-003 retained_intron Homo_sapiens 0 477
ENST00000412023 RPL13P5-002 processed_transcript Homo_sapiens 0 233
ENST00000413822 RPL13P-001 processed_pseudogene Homo_sapiens 0 348
ENST00000421824 RPL13P5-004 processed_transcript Homo_sapiens 4e-16 90
ENST00000427418 RPL13P-001 processed_pseudogene Homo_sapiens 0 348
ENST00000431236 RPL13P-001 processed_pseudogene Homo_sapiens 0 348
ENST00000440069 RPL13P-001 processed_pseudogene Homo_sapiens 0 353
ENST00000440687 RPL13P2-001 processed_pseudogene Homo_sapiens 0 313
ENST00000441655 RPL13P5-001 transcribed_processed_pseudogene Homo_sapiens 0 231
ENST00000451612 RPL13P5-003 processed_transcript Homo_sapiens 0.0000008 58
ENST00000452368 RPL13-015 protein_coding Homo_sapiens 0 265
ENST00000467736 RPL13-006 protein_coding Homo_sapiens 0 409
ENST00000473114 RP11-333A23.2-001 processed_pseudogene Homo_sapiens 0 244
ENST00000474329 CTD-2086L14.1-001 processed_pseudogene Homo_sapiens 0 340
ENST00000484610 RPL13-004 retained_intron Homo_sapiens 0 357
ENST00000491523 RPL13-005 retained_intron Homo_sapiens 0 355
ENST00000562879 RPL13-011 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000563270 RPL13-016 protein_coding Homo_sapiens 0 459
ENST00000565571 RPL13-018 retained_intron Homo_sapiens 0 457
ENST00000567815 RPL13-009 protein_coding Homo_sapiens 0 599
ENST00000593989 RPL13P-001 processed_pseudogene Homo_sapiens 0 353
ENST00000608758 RPL13P-001 processed_pseudogene Homo_sapiens 0 353
ENST00000609856 RPL13P-001 processed_pseudogene Homo_sapiens 0 353

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