C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000756 Rpl13-001 ENSMUSG00000000740 10090 + 8:123102350-123105244 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0002 VISTA 8:122617544-123223043
CIL_000331 CIL_000331_0002 CGP 8:123062942-123105244
CIL_0006AP CIL_0006AP_0003 CGP 8:123102350-123135182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311528 RPL13-001 protein_coding Homo_sapiens 0 730
ENST00000392730 RPL13P12-001 processed_pseudogene Homo_sapiens 0 704
ENST00000393099 RPL13-002 protein_coding Homo_sapiens 0 730
ENST00000396818 RPL13P-001 processed_pseudogene Homo_sapiens 0 448
ENST00000399461 RPL13-003 retained_intron Homo_sapiens 0 584
ENST00000412023 RPL13P5-002 processed_transcript Homo_sapiens 0 311
ENST00000413822 RPL13P-001 processed_pseudogene Homo_sapiens 0 442
ENST00000421824 RPL13P5-004 processed_transcript Homo_sapiens 4e-31 139
ENST00000427418 RPL13P-001 processed_pseudogene Homo_sapiens 0 442
ENST00000431236 RPL13P-001 processed_pseudogene Homo_sapiens 0 442
ENST00000440069 RPL13P-001 processed_pseudogene Homo_sapiens 0 448
ENST00000440687 RPL13P2-001 processed_pseudogene Homo_sapiens 0 396
ENST00000441655 RPL13P5-001 transcribed_processed_pseudogene Homo_sapiens 0 303
ENST00000451612 RPL13P5-003 processed_transcript Homo_sapiens 0.00000000003 73
ENST00000452368 RPL13-015 protein_coding Homo_sapiens 0 313
ENST00000467736 RPL13-006 protein_coding Homo_sapiens 0 468
ENST00000473114 RP11-333A23.2-001 processed_pseudogene Homo_sapiens 0 303
ENST00000474329 CTD-2086L14.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000484610 RPL13-004 retained_intron Homo_sapiens 0 446
ENST00000487034 RPL13-007 retained_intron Homo_sapiens 1e-35 154
ENST00000491523 RPL13-005 retained_intron Homo_sapiens 0 444
ENST00000562879 RPL13-011 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000563270 RPL13-016 protein_coding Homo_sapiens 0 564
ENST00000563749 RPL13-010 retained_intron Homo_sapiens 4e-35 154
ENST00000565571 RPL13-018 retained_intron Homo_sapiens 0 521
ENST00000567815 RPL13-009 protein_coding Homo_sapiens 0 758
ENST00000593989 RPL13P-001 processed_pseudogene Homo_sapiens 0 448
ENST00000608758 RPL13P-001 processed_pseudogene Homo_sapiens 0 448
ENST00000609856 RPL13P-001 processed_pseudogene Homo_sapiens 0 448

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