C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 7290
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000104990 Gm7290-001 ENSMUSG00000078192 10090 - 7:142757256-142757852 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000104990
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000104990 0.166±0.13 0.186±0.08 0.091±0.00 0.016±0.00 0.143±0.05 0.058±0.00 0.059±0.00 0.047±0.03 0.193±0.07 0.188±0.01 0.175±0.12 0.709±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_0009BT CIL_0009BT_0002 VISTA 7:142749845-143351046

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311528 RPL13-001 protein_coding Homo_sapiens 0 597
ENST00000392730 RPL13P12-001 processed_pseudogene Homo_sapiens 0 586
ENST00000393099 RPL13-002 protein_coding Homo_sapiens 0 597
ENST00000396818 RPL13P-001 processed_pseudogene Homo_sapiens 0 403
ENST00000399461 RPL13-003 retained_intron Homo_sapiens 0 479
ENST00000412023 RPL13P5-002 processed_transcript Homo_sapiens 0 263
ENST00000413822 RPL13P-001 processed_pseudogene Homo_sapiens 0 398
ENST00000421824 RPL13P5-004 processed_transcript Homo_sapiens 1e-25 121
ENST00000427418 RPL13P-001 processed_pseudogene Homo_sapiens 0 398
ENST00000431236 RPL13P-001 processed_pseudogene Homo_sapiens 0 398
ENST00000440069 RPL13P-001 processed_pseudogene Homo_sapiens 0 403
ENST00000440687 RPL13P2-001 processed_pseudogene Homo_sapiens 0 322
ENST00000441655 RPL13P5-001 transcribed_processed_pseudogene Homo_sapiens 0 263
ENST00000451612 RPL13P5-003 processed_transcript Homo_sapiens 0.000000001 68
ENST00000452368 RPL13-015 protein_coding Homo_sapiens 0 270
ENST00000467736 RPL13-006 protein_coding Homo_sapiens 0 403
ENST00000473114 RP11-333A23.2-001 processed_pseudogene Homo_sapiens 0 267
ENST00000474329 CTD-2086L14.1-001 processed_pseudogene Homo_sapiens 0 333
ENST00000484610 RPL13-004 retained_intron Homo_sapiens 0 355
ENST00000491523 RPL13-005 retained_intron Homo_sapiens 0 401
ENST00000562879 RPL13-011 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000563270 RPL13-016 protein_coding Homo_sapiens 0 475
ENST00000565571 RPL13-018 retained_intron Homo_sapiens 0 451
ENST00000567815 RPL13-009 protein_coding Homo_sapiens 0 597
ENST00000593989 RPL13P-001 processed_pseudogene Homo_sapiens 0 403
ENST00000608758 RPL13P-001 processed_pseudogene Homo_sapiens 0 403
ENST00000609856 RPL13P-001 processed_pseudogene Homo_sapiens 0 403

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