C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 42 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398469 KRT42P-002 ENSG00000214514 9606 - 17:41626327-41640199 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungMuscleOvaryTestisENST00000398469
Transcript ID Brain Breast Kidney Liver Lung Muscle Ovary Testis
ENST00000398469 0.040±0.00 0.029±0.00 0.019±0.00 0.017±0.00 0.112±0.00 0.008±0.00 0.147±0.06 0.280±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 387
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 370
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 370
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 337
ENSMUST00000107406 Krt42-002 retained_intron Mus_musculus 0 309
ENSMUST00000007280 Krt16-001 protein_coding Mus_musculus 5e-30 137
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0.000000002 69
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000004 58
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00005 55

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