C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007280 Krt16-001 ENSMUSG00000053797 10090 - 11:100246091-100248902 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverLungMusclePlacentaENSMUST00000007280
Transcript ID Bladder Brain Breast Colon Liver Lung Muscle Placenta
ENSMUST00000007280 0.003±0.00 0.056±0.02 0.048±0.02 0.175±0.12 0.003±0.00 0.297±0.02 0.033±0.00 0.225±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_0012 CGP 11:100203162-100248902
CIL_00056U CIL_00056U_0016 CGP 11:100246091-100261029

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005856 IEA cytoskeleton
GO:0005882 IDA intermediate filament
GO:0007568 IEA aging
GO:0030336 IEA negative regulation of cell migration
GO:0042633 IEA hair cycle
GO:0045104 IDA intermediate filament cytoskeleton organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099835 zgc:92380-202 protein_coding Danio_rerio 0.00000001 66
ENSDART00000060593 zgc:92380-201 protein_coding Danio_rerio 0.00000001 66
ENSDART00000113883 zgc:92380-203 protein_coding Danio_rerio 0.00000001 66
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 0 1101
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 527
ENST00000269576 KRT10-002 protein_coding Homo_sapiens 0 224
ENST00000300992 KRT17P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 640
ENST00000301653 KRT16-001 protein_coding Homo_sapiens 0 1393
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 756
ENST00000312150 KRT25-001 protein_coding Homo_sapiens 2e-37 161
ENST00000326333 KRT17P2-002 processed_transcript Homo_sapiens 0 339
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 0 337
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 527
ENST00000398469 KRT42P-002 processed_transcript Homo_sapiens 5e-30 137
ENST00000399124 KRT16P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1158
ENST00000399211 KRT17P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 675
ENST00000414673 KRT16P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1186
ENST00000417510 KRT16P6-002 processed_transcript Homo_sapiens 0 640
ENST00000420566 KRT17P3-001 unprocessed_pseudogene Homo_sapiens 0 667
ENST00000425692 KRT16P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 935
ENST00000438131 KRT42P-001 processed_transcript Homo_sapiens 1e-16 94
ENST00000439127 KRT16P3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1057
ENST00000441550 KRT14-002 retained_intron Homo_sapiens 0 263
ENST00000453795 KRT17P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 7.00649e-45 185
ENST00000453883 KRT16P4-001 transcribed_processed_pseudogene Homo_sapiens 0 409
ENST00000455284 KRT16P5-001 processed_pseudogene Homo_sapiens 0 409
ENST00000458290 KRT15-006 protein_coding Homo_sapiens 0 281
ENST00000458343 KRT42P-003 transcribed_unprocessed_pseudogene Homo_sapiens 1e-30 137
ENST00000463447 KRT15-005 retained_intron Homo_sapiens 0 268
ENST00000474031 KRT15-008 retained_intron Homo_sapiens 0 337
ENST00000476662 KRT14-003 retained_intron Homo_sapiens 0 586
ENST00000491673 KRT17-004 retained_intron Homo_sapiens 0 231
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 0 388
ENST00000540235 KRT17-201 protein_coding Homo_sapiens 0 640
ENST00000577449 KRT17P1-005 retained_intron Homo_sapiens 0 315
ENST00000577750 KRT16P1-005 retained_intron Homo_sapiens 0 252
ENST00000577817 KRT17-005 protein_coding Homo_sapiens 0 230
ENST00000579062 KRT16P2-002 processed_transcript Homo_sapiens 0 355
ENST00000580113 KRT16P3-004 processed_transcript Homo_sapiens 0 702
ENST00000580363 KRT17P1-003 processed_transcript Homo_sapiens 2.00386e-43 180
ENST00000580621 KRT16P3-002 retained_intron Homo_sapiens 0 893
ENST00000581027 KRT16P1-003 processed_transcript Homo_sapiens 0 697
ENST00000581146 KRT17P2-004 retained_intron Homo_sapiens 0 265
ENST00000581210 KRT16P1-006 processed_transcript Homo_sapiens 0 196
ENST00000582047 KRT17P1-004 retained_intron Homo_sapiens 0 265
ENST00000583748 KRT16P6-003 processed_transcript Homo_sapiens 0 233
ENST00000584135 KRT16P1-004 processed_transcript Homo_sapiens 0 333
ENST00000584759 KRT16P3-003 retained_intron Homo_sapiens 0 259
ENST00000584769 KRT17P2-003 processed_transcript Homo_sapiens 0 350
ENST00000584962 KRT16P1-002 retained_intron Homo_sapiens 0 887
ENST00000588319 KRT16-002 retained_intron Homo_sapiens 0 501
ENST00000590990 KRT16-004 protein_coding Homo_sapiens 1e-28 130
ENST00000593067 KRT16-003 protein_coding Homo_sapiens 0 898

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